BAC Information

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BAC

Clone NameMSMg01-118I20
Chromosome5 (Build37)
Map Location 151,440,775 - 151,441,315
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik
Downstream geneBC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118I20.T7 (MSMg01no118_i20.b1)MSMg01-118I20.TJ (MSMg01no118_i20.g1)
ACCAG329394AG329395
length688693
length of high quality
(start - end)
573 (43 - 615)250 (76 - 325)
definitionCHROMAT_FILE: MSMg01no118_i20.b1 PHD_FILE: MSMg01no118_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:26 2005CHROMAT_FILE: MSMg01no118_i20.g1 PHD_FILE: MSMg01no118_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCATTTTCGCGCTTTGTAAATTTCAGAGGAAACCTTGGGTTATAT
TAGTATTGATTTAGTGCAGTTAAACTTTAAAAGCTCGTGGAAGAATGATT
ACAGTTGTCAGTGTCTAGATTATAATGAATAGAATATGTGTATAAATAAT
GATTTAGAACAACCTTTTTATGTAAATTCTTAACACATCACTTTCAGGCT
TTATACAGGAAAAAGAGGGTGTTATGCCACAAATAACTCCTAGTGTTTTG
TATATTTTTAATTGTGCCAGCATGTGTTTGCATGCATGCATGTGTGTGCC
TGTGCAGTCGCTGTCATTCATGTGCAGGTCATGAGTGAGGGTCTGGGATC
AAACTCAGGTAGATTAGATTTGGTGGCAAATGTTTTTACCCACTGAGCTA
TTCTTTTTTAGTTTTTCTGTGTAGCCCTGGAACTGTCCTGGAACTCACTT
TGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCACCTGCCTCCG
GAGTGCTGGGATTAAAGGCGTGCACCACCACGCTCGGCATCCACTGAGCT
ATTCTTTTGGGGAAAAGATCATCAACAATAAAGAGAATGATTATCCTTTT
TTTAAAAAAAAAAGCATGGCTTTCTATAACCAATCCCT
NAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGAAATTCTTAGGCCCTGCAGTGGCTCCCGCC
TTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAG
GCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG
AAACTCTGTCTCAAAAACACAAAAAAACAAAACAACAACAACAACAAAAG
AATTCTTAGGCTAGGTAGTGGGGGCAACAAGCCTTTAATCCTAACACTTG
GGAGGCAAAGACAGGCAGATCTCTAGTTTTATGGCCAGCCTGATCTATGT
AGTGAGTACCAAGATAACCAGTGCTACACAGAAAACAAAAAACAAAAACA
AAACAAAACAACAAAACAAACAAAAAACAAGCAAACCACCAACCAACCCT
AACCAAAACAAAACAAAATGAAGAAAAACAATATAAAAATAATAAAAAAG
GAAGTATCTGGCTGGTAAGATGGCTGAGCTGTTAAAAGCACTGACTGCTC
TTCCGGATGTCCTAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC
CATACATAGTTACCAAGAAACAAAAAATTAATATAATAATAATACTAAAA
CGGGGGCAGGGGGTCAAAAACCGAGTAAGCTGGGGCCAAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_i20.b1 MSMg01no118_i20.b1 CHROMAT_FILE:
MSMg01no118_i20.b1 PHD_FILE: MSMg01no118_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:26 2005
         (573 letters)



>mm_chr5_151440775_151441745
          Length = 971

 Score =  996 bits (515), Expect = 0.0
 Identities = 536/543 (98%), Gaps = 2/543 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaccattttcgcgctttgtaaatttcagaggaaaccttgggttatattagtat 64
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaattctcaccatttt-gtgctttgtaaatttcagaggaaaccttgggttatattagtat 483

                                                                       
Query: 65  tgatttagtgcagttaaactttaaaagctcgtggaagaatgattacagttgtcagtgtct 124
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 482 tgatttagtgcagtt-aactttaaaaactcgtggaagaatgattacagttgtcagtgtct 424

                                                                       
Query: 125 agattataatgaatagaatatgtgtataaataatgatttagaacaacctttttatgtaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agattataatgaatagaatatgtgtataaataatgatttagaacaacctttttatgtaaa 364

                                                                       
Query: 185 ttcttaacacatcactttcaggctttatacaggaaaaagagggtgttatgccacaaataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttcttaacacatcactttcaggctttatacaggaaaaagagggtgttatgccacaaataa 304

                                                                       
Query: 245 ctcctagtgttttgtatatttttaattgtgccagcatgtgtttgcatgcatgcatgtgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctcctagtgttttgtatatttttaattgtgccagcatgtgtttgcatgcatgcatgtgtg 244

                                                                       
Query: 305 tgcctgtgcagtcgctgtcattcatgtgcaggtcatgagtgagggtctgggatcaaactc 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 243 tgcctgtgcagtcgctgtcattcatgtggaggtcatgagtgagggtctgggatcaaactc 184

                                                                       
Query: 365 aggtagattagatttggtggcaaatgtttttacccactgagctattcttttttagttttt 424
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 183 aggtagattagatttggtggcaaatgtttttacccgctgagctattcttttttagttttt 124

                                                                       
Query: 425 ctgtgtagccctggaactgtcctggaactcactttgtagaccaggctggcctcaaactca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctgtgtagccctggaactgtcctggaactcactttgtagaccaggctggcctcaaactca 64

                                                                       
Query: 485 gaaatctgcctgcacctgcctccggagtgctgggattaaaggcgtgcaccaccacgctcg 544
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  gaaatctgcctgcccctgcctccggagtgctgggattaaaggcgtgcaccaccacgctcg 4

              
Query: 545 gca 547
           |||
Sbjct: 3   gca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 971
Length adjustment: 10
Effective length of query: 563
Effective length of database: 961
Effective search space:   541043
Effective search space used:   541043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)