Query= MSMg01no118_l11.b1 MSMg01no118_l11.b1 CHROMAT_FILE:
MSMg01no118_l11.b1 PHD_FILE: MSMg01no118_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:39 2005
(277 letters)
>mm_chr5_85898295_85898971
Length = 677
Score = 437 bits (226), Expect = e-127
Identities = 264/278 (94%), Gaps = 4/278 (1%)
Strand = Plus / Minus
Query: 1 gtccattttaaattcatgacactttaatatctagaaataaggtactgccttgtcaatacc 60
|||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||
Sbjct: 318 gtccattttaaatttatgacacttttatatctagaaataaggcgctggcttgtcaatacc 259
Query: 61 acagctaactgttctctgtgtctaccacatgagagattgctgggtgttggtgtgatggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acagctaactgttctctgtgtctaccacatgagagattgctgggtgttggtgtgatggtg 199
Query: 121 ctttgtactcaaatgttaaatactggcctccaagatctggttgcactttgataagcatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ctttgtactcaaatgttaaatactggcctccaagatctggttgcactttgataagcatat 139
Query: 181 tctcacataaaacaaatgatgttgtatagactttgctctccaatcttctctaactggtt- 239
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 138 tctcacatagaacaaatgatgttgtgtagactttgctctccaatcttctctaactggtta 79
Query: 240 -attattatttgactaccaccaattactggggagagag 276
|| | | ||||||||||||||||||||||||||||
Sbjct: 78 aataa--aagtgactaccaccaattactggggagagag 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no118_l11.g1 MSMg01no118_l11.g1 CHROMAT_FILE:
MSMg01no118_l11.g1 PHD_FILE: MSMg01no118_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:39 2005
(516 letters)
>mm_chr5_85833968_85834888
Length = 921
Score = 837 bits (433), Expect = 0.0
Identities = 498/523 (95%), Gaps = 9/523 (1%)
Strand = Plus / Plus
Query: 1 ctacatcaccagatgctgggctgttaacagacttgatggtgcttaataataa-atatagt 59
||||||||||||||||| ||||||||||||||||||||||| |||||| || |||||||
Sbjct: 201 ctacatcaccagatgctttgctgttaacagacttgatggtgcctaataagaacatatagt 260
Query: 60 ctgttttgaatttcatctgaatgacaaaattttaaaacaggcttttcctgaaatcagaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttttgaatttcatctgaatgacaaaattttaaaacaggcttttcctgaaatcagaaa 320
Query: 120 gagcatagatttattcctctcacagaattattgtgcataagccatgcctaacaaagtaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcatagatttattcctctcacagaattattgtgcataagccatgcctaacaaagtaca 380
Query: 180 tatgttttacattctatttggtattaacaaaattcattaaataaagtctattaaag---- 235
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtttggcattctatttggtattaacaaaattcattaaataaagtctattaaaggaaa 440
Query: 236 -atactttaaaataaatatacctggacagatttgaaactgcaaaatgtttattagggggg 294
||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 441 aatactttaaaataaacatacctggacaaatttgaaactgcaaaatgtttattggggggg 500
Query: 295 aaaaaaggtccaacaaactttctatgtcaccttcattataactgaaattattttgaaaat 354
||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct: 501 aaag--ggtccaacaaactttccatgtcaccttccttataactgaaattactttgaaaat 558
Query: 355 tttaactgcaactcatgactaaagcaagacccatacaaatttgcttgagttttctttttt 414
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 559 tttaactgcaactcatgactaaagcaagacccaaacaaatttgcttgagttttctttttt 618
Query: 415 tttttt-aattttcatttcagcaagtattcaagaagtataatgctttgtgttttcccaga 473
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttttttaattttcatttcagcaagtattcaagaagtataatgctttgtgttttcccaga 678
Query: 474 catttgtgttgtgacattcatatatatatatatatatatatat 516
|||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 679 catttgtgttatgacagtcatatatatatatatatatatatat 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 921
Length adjustment: 10
Effective length of query: 506
Effective length of database: 911
Effective search space: 460966
Effective search space used: 460966
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
