Query= MSMg01no118_n09.b1 MSMg01no118_n09.b1 CHROMAT_FILE:
MSMg01no118_n09.b1 PHD_FILE: MSMg01no118_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:48 2005
(295 letters)
>mm_chr5_41057440_41058134
Length = 695
Score = 530 bits (274), Expect = e-155
Identities = 289/294 (98%)
Strand = Plus / Plus
Query: 1 aaaagattattgtaaggaacaaggtaagagctgttttgatatttctagcccataaactac 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aaaagattattgtaaggaacaaggtaagagctgttttgatatttctagtccataaactac 260
Query: 61 atgggaaattactattctatgccattgagcagacttagtaccaaatatgagcaggaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggaaattactattctatgccattgagcagacttagtaccaaatatgagcaggaccca 320
Query: 121 gtaaaattttatgtcctaagacaggtgatgggtcacacttggcttgaggttcaaaatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaaattttatgtcctaagacaggtgatgggtcacacttggcttgaggttcaaaatttt 380
Query: 181 gctggtctgcagtatgcaggtcataccatctcattttgtcatggttaaaggcacaagtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctggtctgcagtatgcaggtcataccatctcattttgtcatggttaaaggcacaagtat 440
Query: 241 gccatatattattatataccctgccaattactgataacctggcaagtttgaagg 294
|||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 gccatagaaaattatataccctgccaattactgataacctagcaagtttgaagg 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no118_n09.g1 MSMg01no118_n09.g1 CHROMAT_FILE:
MSMg01no118_n09.g1 PHD_FILE: MSMg01no118_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:48 2005
(501 letters)
>mm_chr5_41167777_41168678
Length = 902
Score = 932 bits (482), Expect = 0.0
Identities = 497/502 (99%), Gaps = 1/502 (0%)
Strand = Plus / Minus
Query: 1 ttcagaaa-atatttccattgaactatatgtatagctgttgactatacacacccttatta 59
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 702 ttcagaaacatatttccattgaactatatgtatagctgttgactatacacacccctatta 643
Query: 60 tgcttttgattatacgttttaactcaaatctgaatatatggtctgattaaggtttctttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgcttttgattatacgttttaactcaaatctgaatatatggtctgattaaggtttctttt 583
Query: 120 aatttgttgaagttttgatgtcataatttattagatatagtagattaaagatgagacaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aatttgttgaagttttgatgtcataatttattagatatagtagattaaagatgagacaaa 523
Query: 180 gttacttggaattgaaatataatattgaaattaaatcactgacttttctttatcaagaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gttacttggaattgaaatataatattgaaattaaatcactgacttttctttatcaagaat 463
Query: 240 ttccctagcaagcttatattttaaggaaatggtgttcataaaagttctggctgaagactc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttccctagcaagcttatattttaaggaaatggtgttcataaaagttctggctgaagactc 403
Query: 300 aactctggacatcatataatctccagcaactggttattgttctaagaaaacacttgatat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aactctggacatcatataatctccagcaactggttattgttctaagaaaacacttgatat 343
Query: 360 attgctcttgtcctctttcaacccaaccatgaagttaagagcagaaaataatgtttctca 419
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 342 attgctcttgtcctctttcaacccaaccatgaagttaagagcagaaagtaatatttctca 283
Query: 420 aaaggtagacgtcttgaccataactgatttaccactgtatatgcatgtgactagcacatg 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 282 aaaggtagacgtcttgaccataactgatttaccactgcatatgcatgtgactagcacatg 223
Query: 480 acaaatagaagttttgaaatag 501
||||||||||||||||||||||
Sbjct: 222 acaaatagaagttttgaaatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space: 437972
Effective search space used: 437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
