BAC Information

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BAC

Clone NameMSMg01-118O17
Chromosome5 (Build37)
Map Location 138,892,544 - 138,893,198
singlet/doubletsinglet
Overlap gene2610020C11Rik
Upstream geneZan, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1
Downstream geneLOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118O17.T7 (MSMg01no118_o17.b1)MSMg01-118O17.TJ (MSMg01no118_o17.g1)
ACCAG329667AG329668
length701704
length of high quality
(start - end)		659 (40 - 698)634 (71 - 704)
definitionCHROMAT_FILE: MSMg01no118_o17.b1 PHD_FILE: MSMg01no118_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:55 2005CHROMAT_FILE: MSMg01no118_o17.g1 PHD_FILE: MSMg01no118_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGAATCCGCGGAATTC
TGTTGTCTGTCGTTATTGAAGATTTTTACATGTACATTTTCTTCTCTGAT
TCCTACCTAGTCTTGCTATCTAATACTGGCTGATATCTAATATAGCAAGT
CTCCAAGATTACCATATTCCTATTCCACTTTATGAATCAGCTTGATGGGC
ATAGACATGTACTTTTATACCTGTCTGGTAGAAGAACTAGTCAAAGAGAT
TTTACAAGGGGCTTTGATTAGTTGTGGCACCCTATTGTTGCCTCAATGGC
ATCGCTTCTTATTGATTGATATAACATTAATTTCACTTTGTAGAATTCTG
GAAGGTCATATTTATGTACAAATACATGTCTGTTCAATTTCCTATTCTGT
AACTACTAAAATACATTCTAAAATATATTCCTAAGAAATCTTTTCTATCT
CAAAGATGTCTGATGAAATCGTCCATTTCATCATTTTTTTATTAATTTGG
ATAGATTCTCTTTAATTAGCGGTCATCATAATACACTAGTCCAATATTTC
ATGTGCAAAAAACTTCTGGTTTACTTTGGCATGCAGTATGATTTGACTAA
TGTAAATATGGCTACTGTTGAATTCGTTCATATTCTATTTGCTCCAAAAC
AGTTTTCCTTTGTCTCAGTCTGTCTTCACCCATATTATAAACTCACATTT
A

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCCCTGACTAAAGGAAACAAGTCAAAAGA
TTGGTCTGGATTTTCTCCACTGAACTCTGGGTACAGTACAGCGTAGCCAT
TAAGTGGTTATTGTGGGTTCTTTAAAGATAAAATCCCATGTAACTCAGAC
TGCCTCAATCTCTGTGTACATAAAGCTGAACTTGAATTCCTGATCTTCCT
GACTGCCTGTACTGTAGGTGTGTAGCATCATGGACTAGTTTACATTATGC
TGGGATCTAGCCTAGGGCTTTAGTTTAAAAAAAAAAAAAAGAGTCATTGG
TTCCCTAAAGAAGGTTCTGAAATTTAAAGAGATGAGAATATACAGGTGAA
ATTTAAAGACAGAATATCACCTATGAGGGCCATGATAGTTTCCTACAAAT
GGGCTTGTGCTGTAAAATTTTATACAACATTGTGCACACTTACAGCACTG
TATTTTTCAGTAGTACTTCAACACCCCTCTTGATATAGTCAATCTACTAA
AAAACACACTGGGGGACACTAGATAAAAATACAAATGTCAAAAATAAACA
GAAAAGGCACTGAGGTGTGGATGTAGAATAATTTCTTGAATAACATTCAC
CCCATGACACCTCAGAGGATAAGGAAGAAAAATCTTTGTTGCAGATGTTA
TTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_o17.b1 MSMg01no118_o17.b1 CHROMAT_FILE:
MSMg01no118_o17.b1 PHD_FILE: MSMg01no118_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:55 2005
         (659 letters)



>mm_chr5_138892339_138893398
          Length = 1060

 Score = 1212 bits (627), Expect = 0.0
 Identities = 648/655 (98%), Gaps = 1/655 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctgttgtctgtcgttattgaagatttttacatgtacattttcttctctgattcct 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gaattctgttgtctgttgttattgaagatttttacatgtacattttcttctctgattcct 801

                                                                       
Query: 66  acctagtcttgctatctaatactggctgatatctaatatagcaagtctccaagattacca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acctagtcttgctatctaatactggctgatatctaatatagcaagtctccaagattacca 741

                                                                       
Query: 126 tattcctattccactttatgaatcagcttgatgggcatagacatgtacttttatacctgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tattcctattccactttatgaatcagcttgatgggcatagacatgtacttttatacctgt 681

                                                                       
Query: 186 ctggtagaagaactagtcaaagagattttacaaggggctttgattagttgtggcacccta 245
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 680 ctggtagaagaactagtcaaagagattttacaaggagctttgattagttgtggcacccta 621

                                                                       
Query: 246 ttgttgcctcaatggcatcgcttcttattgattgatataacattaatttcactttgtaga 305
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 ttgttgcctcaatggcatcacttcttattgattgatataacattaatttcattttgtaga 561

                                                                       
Query: 306 attctggaaggtcatatttatgtacaaatacatgtctgttcaatttcctattctgtaact 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attctggaaggtcatatttatgtacaaatacatgtctgttcaatttcctattctgtaact 501

                                                                       
Query: 366 actaaaatacattctaaaatatattcctaagaaatcttttctatctcaaagatgtctgat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actaaaatacattctaaaatatattcctaagaaatcttttctatctcaaagatgtctgat 441

                                                                       
Query: 426 gaaatcgtccatttcatcatttttttattaatttggatagattctctttaattagcggtc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaaatcgtccatttcatcatttttttattaatttggatagattctctttaattagcggtc 381

                                                                       
Query: 486 atcataatacactagtccaatatttcatgtgcaaaaaacttctggtttactttggcatgc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atcataatacactagtccaatatttcatgtgcaaaaaacttctggtttactttggcatgc 321

                                                                       
Query: 546 agtatgatttgactaatgtaaatatggctactgttgaattcgttcatattctatttgctc 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtatgatttgactaatgtaaatatggctactgttgaattcgttcatattctatttgctc 261

                                                                  
Query: 606 caaaacagttttcctttgtctcagtctgtc-ttcacccatattataaactcacat 659
           ||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||
Sbjct: 260 caaaacagttttcctttgtttcagtctgtccttcacccgtattataaactcacat 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space:   681450
Effective search space used:   681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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