BAC Information

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BAC

Clone NameMSMg01-119D23
Chromosome5 (Build37)
Map Location 111,271,050 - 111,412,744
singlet/doubletdoublet
Overlap geneChek2, Ttc28
Upstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb
Downstream genePitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119D23.T7 (MSMg01no119_d23.b1)MSMg01-119D23.TJ (MSMg01no119_d23.g1)
ACCAG329914AG329915
length704704
length of high quality
(start - end)		239 (80 - 318)578 (72 - 649)
definitionCHROMAT_FILE: MSMg01no119_d23.b1 PHD_FILE: MSMg01no119_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:20 2005CHROMAT_FILE: MSMg01no119_d23.g1 PHD_FILE: MSMg01no119_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,271,050 - 111,271,288)(111,412,328 - 111,412,744)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATGCGCGGA
ATTCTGCAGCTTTCCCGAAATTGGAACTCCAGTGTAGTTCCTTGGGGCCT
TGAACTTGCATTGATCTTGTCTCAGTTGGGATTACACATATCGACCATAT
GTGGTTCAAATTTATTCATTTGAATGTGGAGACCTAGCTCATTCTGAGAC
AGTTTTGAAAGATACTTGTATTAGTCAGGGTTCTCTAGAGGAACAGAACT
GATAGAATGAGTATGTATGTATGTATATATAGGGACTAATTAGAGTGGCT
TACATGCTATGGTCCAGCTATTTCTTCAATGGCTACCCAGGGGAGGTGTA
AGAATCCAGTAAGAATCCAGGCAGGATGTCTTAGTTGGTCTTTAGTATAC
ATTACTATCTTGTAGAAGTATGCTCTAGGGGGTTGGAGAGATGGCTCAGT
GGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGC
AACCATGGTGGCTTGCAACCATCTGTAATGAGATCTGACACCCTCTTTTG
GGGTATCTGAAGACAACTACCATGTATTTACATATAATAAATTAAAAAAA
AAAGTATGCTCACTAGTGCTCAGTGAAGGAATGAACTTGCCAGTAAGAGC
GAGATCAAACTGGTAAAGCTTCCTTTTTCATGCCCATTATATAGGCTGCC
AGCA

CGATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAAGTGACTAGGAAGAGACACCAGGACT
GTGGCAACTTTTACAAAGGAAAACATTTAACTGGGGCTGATTTAAATTTT
TCAGAGGTCCAGCCCATAATCATCATGGCGGGGAGCATGGCAGCATACAG
GCAGACATGGTGCTGGCAAAGGACCTGTGAATGCTACATCCTGATCTGAA
GACCACTAGAAGACTGACTCTCTCAGGCAGCTAGGAGAGGGGTCTCAAAG
GCCACCCCCAGAGTGACACACTTCATCCAAAAAGACCACACCCACTACAA
CAAGGCCACACCTCCTAATAGTGACACTCCCTGTGGGCCAAGTATTCAAA
CAGACTAATCGATGGGGCCATGCCCACTCAAAAGATCGCACTAGGTAATA
AATGCTAAAACACTAAGTATAAAGCATGACTGCATTAAAATTTGAAATTA
ACATTATACTCCAAAATTAAATATTTCATCACAGATAAAGAGTAGGGAGG
GGTCTGTGACATATTCTTATAAAAGTTATGTCATTGCAAGACACAGATCT
ACAGGGTGTGATCCTTCCCACGAGCTTTCCAGGGGAGCCCCTTCAGAGAA
GTCCTAAGAAGCAAGGTACTGACTGGGAGAAGGCACAGGAGAACGCATAT
AACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_d23.b1 MSMg01no119_d23.b1 CHROMAT_FILE:
MSMg01no119_d23.b1 PHD_FILE: MSMg01no119_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:20 2005
         (239 letters)



>mm_chr5_111270850_111271488
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtagttccttggggccttgaacttgcattgatcttgtctcagttgggattacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtagttccttggggccttgaacttgcattgatcttgtctcagttgggattacacat 260

                                                                       
Query: 61  atcgaccatatgtggttcaaatttattcatttgaatgtggagacctagctcattctgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcgaccatatgtggttcaaatttattcatttgaatgtggagacctagctcattctgaga 320

                                                                       
Query: 121 cagttttgaaagatacttgtattagtcagggttctctagaggaacagaactgatagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttttgaaagatacttgtattagtcagggttctctagaggaacagaactgatagaatg 380

                                                                      
Query: 181 agtatgtatgtatgtatatatagggactaattagagtggcttacatgctatggtccagc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtatgtatgtatgtatatatagggactaattagagtggcttacatgctatggtccagc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no119_d23.g1 MSMg01no119_d23.g1 CHROMAT_FILE:
MSMg01no119_d23.g1 PHD_FILE: MSMg01no119_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:20 2005
         (578 letters)



>mm_chr5_111411767_111412744
          Length = 978

 Score =  760 bits (393), Expect = 0.0
 Identities = 411/417 (98%)
 Strand = Plus / Minus

                                                                       
Query: 162 gctacatcctgatctgaagaccactagaagactgactctctcaggcagctaggagagggg 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 gctacatcctgatctgaagaccactagaagactgactctctcaggcagctaggagagggg 919

                                                                       
Query: 222 tctcaaaggccacccccagagtgacacacttcatccaaaaagaccacacccactacaaca 281
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 918 tctcaaaggccacccccagagtgacacacttcatccaaaaagaccatacccactacaaca 859

                                                                       
Query: 282 aggccacacctcctaatagtgacactccctgtgggccaagtattcaaacagactaatcga 341
           ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aggccacgcctcctaatagcgacactccctgtgggccaagtattcaaacagactaatcga 799

                                                                       
Query: 342 tggggccatgcccactcaaaagatcgcactaggtaataaatgctaaaacactaagtataa 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tggggccatgcccactcaaaagatcgcactaggtaataaatgctaaaacactaagtataa 739

                                                                       
Query: 402 agcatgactgcattaaaatttgaaattaacattatactccaaaattaaatatttcatcac 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agcatgactgcattaaaatttgaaattaacattatactccaaaattaaatatttcatcac 679

                                                                       
Query: 462 agataaagagtagggaggggtctgtgacatattcttataaaagttatgtcattgcaagac 521
           ||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 678 agagaaagagtagggaagggtctgtgacatattcttataaaagttatgtcgttgcaagac 619

                                                                    
Query: 522 acagatctacagggtgtgatccttcccacgagctttccaggggagccccttcagaga 578
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acagatctacagggtgtgatccttcccacgagctttccaggggagccccttcagaga 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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