BAC Information

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BAC

Clone NameMSMg01-119I17
Chromosome5 (Build37)
Map Location 26,722,017 - 26,722,260
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837
Downstream gene4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119I17.T7 (MSMg01no119_i17.b1)MSMg01-119I17.TJ (MSMg01no119_i17.g1)
ACCAG330135AG330136
length714713
length of high quality
(start - end)
45 (189 - 233)248 (71 - 318)
definitionCHROMAT_FILE: MSMg01no119_i17.b1 PHD_FILE: MSMg01no119_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:43 2005CHROMAT_FILE: MSMg01no119_i17.g1 PHD_FILE: MSMg01no119_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGGACTGGGCGGAAN
TCNCAAGNGATTTCCGNGAGTCGCCTCCTTGGGACTCTCAAGTCATGTAT
GCTACTATAACAAAATAATCCACCCCAGTGACTTCTTATAAAAAGAAACC
GTTTTATCGTATTTCTGAAGGCTGGAAGGCCAAGCTCAAGATGCTGGTAG
ATCCCATGGCTGCTGAAGGCTACTTCCTGGCTAATGAACGGAACCTCCCC
ATGGTTTCCTTTTATCAGAGAATTTACCTTGTTACTGAGAGTGCCACCAG
CATGACGCCATTACCTCCCTTTGGTCCTTTCCAACCTCCCTGGAGTTATA
AGACCATGGTACTCTTCCTCCCCGCCTACCAGTTTTCAAAGAGAGCATAG
TCCCATTGTCTTACAAACCACAACTGCACGTTCTGCTCTTCTGCCAGGGT
CTGTTCTCCAGCAAACCTCAAGCTGCCCGCAACATATTATTATCTACCTT
TCTAGATGCAACATACACATGCGCCTCCCCTACCTACACATACGCGAATG
CCCCTTCTCCCATTCTGCAGGGACCCATTTGCCCATCTATGCTCATTACC
CCCTATCCTCCTCTATTTTGCCTGACTCCCGCCTCATATCCCCCTCAAAA
ACCATTATGCCTTTTTGTATTGGTTTTGAAATCCTTCCACTGAAAGTGTT
ATTTGTCATTCCCC
ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCCTATAACACTTAGCAATGGCATAATCC
AAGCTAAAAGGCCTTGCAATATACTAACCACCTCAGAAAGACAGGCAGAC
TTATGGTTTACACAGAAGAAAATTAACCAAAGCTGTGTTGAAAAATTGCC
TTTATTACTATGAATGGAATGTACAGTCTGGGCCCATTAAAAAGAGGAGA
GTCTAATGCTGAACACAGAGGCAACCCCAAAACCCTGACATCCATTGGTT
CTACTTTCATTGTGCACTTGGTCTACATGAGCGAGTTCTCATGATCTACA
CATAGCAGGTATGTCTTCAAAAATAACTCTACTTGAAGACGCAAAGGCAG
CTCACTGACATTGACCGCTAAACATGGTTCTCTGAATTCAACCACTAACC
GACGTACAAAGCTGGCCATGGACAATGCTTAGCATCCTAGTGTACAGCGA
CTGTATATTCTCAGGCTCCCTGTCCAGCAGCCAGTCCAGTGAAAGGCACC
CTCTATAAACATGCTGAACGTCTTCTGAGGACACCTACCGCGGGTCTGTG
CTCTGGCCCGCAGGTGCATATGCTGACAAGGAGTACCATAGCCCCATAGA
CTTGTGGATACCCCTTTAACATTCCTTCCGTGTTATATAAAACGCACCAT
CTTTTCCGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_i17.g1 MSMg01no119_i17.g1 CHROMAT_FILE:
MSMg01no119_i17.g1 PHD_FILE: MSMg01no119_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:43 2005
         (248 letters)



>mm_chr5_26721817_26722464
          Length = 648

 Score =  364 bits (188), Expect = e-105
 Identities = 230/244 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctataacacttagcaatggcataatccaagctaaaaggccttgcaatatactaacca 60
           ||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tgcctataacacttagtgatggcataatccaagctaaaaggccttgcaatgtactaacca 260

                                                                       
Query: 61  cctcagaaagacaggcagacttatggtttacacagaagaaaattaaccaaagctgtgttg 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcagaaagacaggcaggcttatggtttacacagaagaaaattaaccaaagctgtgttg 320

                                                                       
Query: 121 aaaaattgcctttattactatgaatggaatgtacagtctgggcccattaaaaagaggaga 180
           | ||||||||||| ||||||||||||| ||||||||||||||| | |||||||||| |||
Sbjct: 321 acaaattgcctttgttactatgaatggcatgtacagtctgggcactttaaaaagagaaga 380

                                                                       
Query: 181 gtctaatgctgaacacagaggcaaccccaaaaccctgacatccattggttctactttcat 240
           ||||||||||||| | ||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 381 gtctaatgctgaaaagagaggcaaccccaaaaccctgacatccattggcactactttcat 440

               
Query: 241 tgtg 244
           ||||
Sbjct: 441 tgtg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)