BAC Information

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BAC

Clone NameMSMg01-119J11
Chromosome5 (Build37)
Map Location 127,008,890 - 127,009,310
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327, Tmem132c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119J11.T7 (MSMg01no119_j11.b1)MSMg01-119J11.TJ (MSMg01no119_j11.g1)
ACCAG330169AG330170
length694699
length of high quality
(start - end)
249 (68 - 316)423 (72 - 494)
definitionCHROMAT_FILE: MSMg01no119_j11.b1 PHD_FILE: MSMg01no119_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:47 2005CHROMAT_FILE: MSMg01no119_j11.g1 PHD_FILE: MSMg01no119_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGACCGCGGA
ATTCCTGATCTTCCAAGTCTTTTATCATGAATAGGTGTTGGATCTTGTCA
AATGTTTTTTCCGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAATGGATTATGTTGATGGATTTCCGTATATTAAACCATC
CCTGCATCCCTGAAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTA
ATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATC
AATATTCATAAGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTT
CTGTGGTTTATGTATCACAGCAATTGCGGCTCCATAGAATGAGTTGGGTA
TAGTTCCTTCTACTTCTATTTTGTGGAATACCTTGTGCAGAACTGGAATT
ACATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTGATCC
TGGTCTTTTTTTGGTTGGCAGACTATTATTGACTGCTTCTATTTTATTAT
GGCATATAGAACTGTCTATATCGTTAACTTGATCCTGATTTACCTTTGTT
ACCTGGTACCTGTCTTGAATTTTGCCCTTTTCGGCCTAGGTTTCCAGTTT
CATTGTTTATAGTCTTTTGTCCAACACTTTGACGTTGTTTTGTT
TCGATGCAGTGNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGGCAAGAACTTTGGATCAGGAAGTAA
CATCTGGGCCAGTAAATTACCAGAAGATAACAAGTGACTTTGCTGATGTG
AAGGGACTTGAGTGGGTGCGAACAGATGTGCATAAATCAGTCGGCTCTCA
GGGGATTTGAAGGCGGGTGAGGTAATTAAAAGTCAAGGGTAATAGAAAAA
AAATATGCAAAGGTAGTGAATGACCATAATGCTTGAAGGTACTCTCCTCA
AAACTGGTTCTATAGCATAGTTCACATGAATCTCTGAATAAGGAGTTGGA
AGAGATTATTCATTAAGGATAGCTCCAGGACCACATAGGCAGAGAAGGAA
ATTAATTCCCCAGAGATAGACGAAGAGATCAGGGTAGTGATGGTAGAGTA
GCTGGAAATGACAGCAAGAAAATCCACCTTCCAACACACAGCATCTATCA
GAAGAGTGTCCAAAGGCCCCTTAGGAGCCTGAGATCTCTGCACTAAAGCC
AAACACAGTAGGTATATATATTTCAGCCATTTGGATTCCCAGAGCCATCT
CTTCTTATGAAGTTCGAAACTGAGTAGAATTGGCTAAGTTCCCTCAATGG
TGATTGGGTGAGATGCTGTTTTGTCCACCTTATGTTGGCCCATTCAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_j11.g1 MSMg01no119_j11.g1 CHROMAT_FILE:
MSMg01no119_j11.g1 PHD_FILE: MSMg01no119_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:47 2005
         (423 letters)



>mm_chr5_127008690_127009511
          Length = 822

 Score =  746 bits (386), Expect = 0.0
 Identities = 413/422 (97%), Gaps = 1/422 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggcaagaactttggatcaggaagtaacatctgggccagtaaattaccagaagataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actggcaagaactttggatcaggaagtaacatctgggccagtaaattaccagaagataac 562

                                                                       
Query: 61  aagtgactttgctgatgtgaagggacttgagtgggtgcgaacagatgtgcataaatcagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 561 aagtgactttgctgatgtgaagggacttgagtgggtgcgaacagatgtgcataagtcagc 502

                                                                       
Query: 121 cggctctcaggggatttgaaggcgggtgaggtaattaaaagtcaagggtaatagaaaaaa 180
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 501 cggctctcaggggatttgaagacgggtgaggtaattaaaagtcaagggtaatag-aaaaa 443

                                                                       
Query: 181 aatatgcaaaggtagtgaatgaccataatgcttgaaggtactctcctcaaaactggttct 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatatgcaaaggtggtgaatgaccataatgcttgaaggtactctcctcaaaactggttct 383

                                                                       
Query: 241 atagcatagttcacatgaatctctgaataaggagttggaagagattattcattaaggata 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 382 atagcaaagttcacatgaatctctgaataaggagttggaagagattattcattaaagata 323

                                                                       
Query: 301 gctccaggaccacataggcagagaaggaaattaattccccagagatagacgaagagatca 360
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 322 gctccaggaccacataggcagagaaggaaattaattccccacaggtagacgaagagatca 263

                                                                       
Query: 361 gggtagtgatggtagagtagctggaaatgacagcaagaaaatccaccttccaacacacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gggtagtgatggtagagtagctggaaatgacagcaagaaaatccaccttccaacacacag 203

             
Query: 421 ca 422
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space:   336582
Effective search space used:   336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)