Query= MSMg01no119_l19.b1 MSMg01no119_l19.b1 CHROMAT_FILE:
MSMg01no119_l19.b1 PHD_FILE: MSMg01no119_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:58 2005
(249 letters)
>mm_chr5_43983603_43984251
Length = 649
Score = 472 bits (244), Expect = e-138
Identities = 247/248 (99%)
Strand = Plus / Plus
Query: 1 gcagatgcctagcaaatactacattctcaacacctctgttcacggtgtcgtctttgtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagatgcctagcaaatactacattctcaacacctctgttcacggtgtcgtctttgtcac 260
Query: 61 cagagatttgcattttctttgcatcaaaaagtataattgatcattagaacagtttttaag 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagatttgcattttctttgcatcgaaaagtataattgatcattagaacagtttttaag 320
Query: 121 cagacaagtgatattgttaattaattcatctaaagtctgctctttggtttcactttagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagacaagtgatattgttaattaattcatctaaagtctgctctttggtttcactttagcc 380
Query: 181 acagactggaaggcaaattcttggcgagatggagaagacagggaagaagtgtcaggtgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagactggaaggcaaattcttggcgagatggagaagacagggaagaagtgtcaggtgaa 440
Query: 241 agatagca 248
||||||||
Sbjct: 441 agatagca 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no119_l19.g1 MSMg01no119_l19.g1 CHROMAT_FILE:
MSMg01no119_l19.g1 PHD_FILE: MSMg01no119_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:58 2005
(467 letters)
>mm_chr5_44131902_44132765
Length = 864
Score = 828 bits (428), Expect = 0.0
Identities = 459/476 (96%), Gaps = 12/476 (2%)
Strand = Plus / Minus
Query: 1 cttcctactctgctgtgggtgtgtttgcatgtgcagggaggagtggggtgggggcgtttc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 834 cttcctactctgctgtgggtgtgtttgcatgtgcagggaggagtggggtgggagtgtttc 775
Query: 61 atggtgcgtacacctaagtgggacctaattgcctcttcaaaaattttattttcaaatact 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 atggtgcatacacctaagtgggacctaattgcctcttcaaaaattttattttcaaatact 715
Query: 121 tcatactagggaagaaagatttgctttgaggttcaaggggc---------aggtgcaaca 171
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 714 tcatactagggaagaaagatttgctttgaggttcaaggggcaagcgtgtaaggtgcaaca 655
Query: 172 tggtttttctgtcatagccatgccttagttgttttgctttttaaatcccctttgacatat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tggtttttctgtcatagccatgccttagttgttttgctttttaaatcccctttgacatat 595
Query: 232 aaatatagtctttgttcatcctatcactatattattttcaaggctgtgccagtgtgtaag 291
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaatatagtctttgttcatcctagcactatattattttcaaggctgtgccagtgtgtaag 535
Query: 292 tgcttgcttgccttgtttttttgtaattttatgagataacccagcatttgctaaattcaa 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgcttgcttgccttgtttttttgtaattttatgagataacccagcatttgctaaattcaa 475
Query: 352 tgctgcagagttgttgtttgttcctctagacaagttgcaaagagttagtgtactaggtct 411
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgctgcaga---gttgtttgttcctctagacaagttgcaaagagttagtgtactaggtct 418
Query: 412 tggagttgtcattctgctggacagaaggaagtgaagggtatgctcgagacaagcaa 467
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tggagatgtcattctgctggacagaaggaagtgaagggtatgctcgagacaagcaa 362
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 864
Length adjustment: 10
Effective length of query: 457
Effective length of database: 854
Effective search space: 390278
Effective search space used: 390278
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
