BAC Information

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BAC

Clone NameMSMg01-120C16
Chromosome5 (Build37)
Map Location 18,569,257 - 18,569,668
singlet/doubletsinglet
Overlap genenone
Upstream geneGnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120C16.T7 (MSMg01no120_c16.b1)MSMg01-120C16.TJ (MSMg01no120_c16.g1)
ACCAG330601AG330602
length776771
length of high quality
(start - end)
353 (128 - 480)424 (128 - 551)
definitionCHROMAT_FILE: MSMg01no120_c16.b1 PHD_FILE: MSMg01no120_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:31 2005CHROMAT_FILE: MSMg01no120_c16.g1 PHD_FILE: MSMg01no120_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATATTTATTTATTTATTATTTTACAAACCCTAACCACCACACCTGCCC
ATTCAANAAGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXGCCGCGGAATTCTGTAGAGTACCCTCTGTTTCTATTTTGTGGAATAGT
TTGAGAAGAACTGGAACTAGATCTTCTTTGAAGGTCTGATAGAACTCTGC
ACTAAACCCATCTGGTCCTGGACTTTTTTTGTTTGGGAGACTATTAATGA
CTGCTTCTATTTCTTTAGGGGATATAGGATTGTTTAGGTCATTAATCTGA
TCCTGATTTAACTTTGGTATCTGGCATCTGTCTAGAAATTTGGCCATTTC
ATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGA
TGGTGTTTTGGATTTCCTCAGGATCTGTTGCTATGTCTCCCTTTTCATTT
CTGATTTTGTTAATTAGGATGCTGTCCCTGTTCTGACTTGTGAGTCTGGC
TAAGGGTTTATCTATCTTGTTGATTTTCTGAAAGAACCAGCACCTCTATT
GGCTGATTCTTTGAATAGATCTTTTTCTTTCCACTTGCATGAATTTGCCC
CTTAAATTGATAATTTCCTGATGCCCACTTCCACTTGGGTGAATTTGCTT
CCTTTTGCTTTACAGCTTTTACGTGTGCTGTCAACTCGCCACCGAGAGTT
CCCTCTAGTCTTCTTTTGCAGGCCCTGCCCGCTTTGAGTTTTCCTCCTAT
GAAATGCTTCCATTGTGTTCCCTAAG
TATTTATATAATTTAATTTTCTGCTCGGTTTTCATCTTAACCNCTTATAA
AAAAAATCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTTCGCGGAATTAAGACCTGATTACACTCTTAAGA
TGAATCTGACCACACGAAAAAATAACATTTGTTAAATTGTAATATATATT
AACAAGAAATCATTTGCCCATTTTAAAATAATCAGTTAATTGCTGATGTA
GGGGTCAGAACTGAACCAGGAAATGACTTTGTTTGGGAACTCTGAAGAAG
TGCAACTTTAGTAATTTGGTTTGATTTCTAAGTTTTATGTGATGTGTATA
TGAGACAATATAAAACATCTTTGCATCCTTCAGAATTGTTTTAAGGTCTG
TCTAAAGTGCTAACTTTCGATTATTTTACTCACTAAAACAACTGACTACT
CTTAACTCCTTCTGTCCTATTTGTGGCTGTGTGCTATTCTGATTGATAAT
TCTAAAGAGACTCTCTTAGACATGTAGTTTTAAAATGCAGAATATTTTAT
TAGCATTTTATCATAATTCTGTTATTGATCTTTAATAGTCTCAGTATTAA
AATAAAACTCAAATGGTAGTCAATTTGGTTGAAACATGTGATCATCTTTG
AAATCCTAAGATACTAATTTGTGAGTTTTTTGAATCTGCACAACTTTGGT
TCTTGTTAGAGGAATCATAGCTTCCGAATCTCCCTTAAATTTCTTCTAGC
CCCCTTTTCTGGGATTCACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_c16.g1 MSMg01no120_c16.g1 CHROMAT_FILE:
MSMg01no120_c16.g1 PHD_FILE: MSMg01no120_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:31 2005
         (424 letters)



>mm_chr5_18568878_18569700
          Length = 823

 Score =  617 bits (319), Expect = 0.0
 Identities = 394/425 (92%), Gaps = 14/425 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacctgattacactcttaagatgaatctgaccacacgaaaaaataacatttgttaaat 60
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 791 aagacctgattacactcttaaaatgaat-tgaccacacgaaaaaataacatttgttaaat 733

                                                                       
Query: 61  tgtaatatatattaacaagaaatcatttgcccattttaaaataatcagttaattgctgat 120
           | ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 732 tttaatatacattaacaagaagtcatttgcccattttaaaataatcagttaatttctgat 673

                                                                       
Query: 121 gtaggggtcagaactgaaccaggaaatgactttgtttgggaactctgaagaagtgcaact 180
           ||||||||||||||||||||||||||||||||||||| ||| |||||||          |
Sbjct: 672 gtaggggtcagaactgaaccaggaaatgactttgtttaggagctctgaa----------t 623

                                                                       
Query: 181 ttagtaatttggtttgatttctaagttttatgtgatgtgtatatgagacaatataaaaca 240
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 622 ttagtaatttgatttgatttctaagttttatgtgaggtgtatatgagacaatacaaaaca 563

                                                                       
Query: 241 tctttgcatccttcagaattgttttaaggtctgtctaaagtgctaactttcgattatttt 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tc-ttgcatccttcagaattgttttaaggtctgtctaaagtgctaactttcgattatttt 504

                                                                       
Query: 301 actcactaaaacaac-tgactactcttaactccttctgtcctatttgtggctgtgtgcta 359
           ||||||||||||||| | |||||||||| | |||||||| || |||||||||||||| ||
Sbjct: 503 actcactaaaacaacat-actactcttatcaccttctgttctttttgtggctgtgtgtta 445

                                                                       
Query: 360 ttctgattgataattctaaagagactctcttagacatgtagttttaaaatgcagaatatt 419
           || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 ttatgattgataattctaaagagactctcttagacatgtagttttaaaatgtagaatatt 385

                
Query: 420 ttatt 424
           |||||
Sbjct: 384 ttatt 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 823
Length adjustment: 9
Effective length of query: 415
Effective length of database: 814
Effective search space:   337810
Effective search space used:   337810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)