Query= MSMg01no120_d05.b1 MSMg01no120_d05.b1 CHROMAT_FILE:
MSMg01no120_d05.b1 PHD_FILE: MSMg01no120_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:34 2005
(272 letters)
>mm_chr5_86737737_86738408
Length = 672
Score = 456 bits (236), Expect = e-133
Identities = 262/274 (95%), Gaps = 6/274 (2%)
Strand = Plus / Plus
Query: 5 gaattctctatgccttctaagggttgctggttgtacattgctgaggcagcggttgtagct 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctatggtttctaagggttgctggttgtacattgctgaggcagcggttgtagct 264
Query: 65 agagcaggtctgactaggacgtagatggttctgtacaagaggctatcctcaggctgtttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagcaggtctgactaggacgtagatggttctgtacaagaggctatcctcaggctgtttc 324
Query: 125 cgcatctgagaactgacaaggctggacttagtggtataagcctgtatccccattatttaa 184
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 ctcatctgagaactgacaaggctggacttagtggtataagcctgtatcctcattatttaa 384
Query: 185 aat------ttaatctgaggccattctggtctacacagtggattccaagctagtcgggat 238
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatggattattaatctgaggccattctggtctacacagtggattccaagctagtcgggat 444
Query: 239 taaaacgagatcccatgttaacaaaacaaaacaa 272
||||| ||||||| ||||||||||||||||||||
Sbjct: 445 taaaatgagatcctatgttaacaaaacaaaacaa 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no120_d05.g1 MSMg01no120_d05.g1 CHROMAT_FILE:
MSMg01no120_d05.g1 PHD_FILE: MSMg01no120_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:34 2005
(289 letters)
>mm_chr5_86897437_86898125
Length = 689
Score = 528 bits (273), Expect = e-154
Identities = 285/289 (98%)
Strand = Plus / Minus
Query: 1 aaactggatttaagattgaagggtttctggaattttcacagtgggatggagtaagtataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaactggatttaagattgaagggtttctggaattttcacagtgggatggagtaagtataa 430
Query: 61 tctctgtttaaaatcagtgtttttattcaactcggaatcagcattatctcatgtttccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctctgtttaaaatcagtgtttttattcaactcggaatcagcattatctcatgtttccaa 370
Query: 121 gttcaatagtggataattgggactgcagcggaaaagttaataccactttgtcctgcttga 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 369 gttcaatagtggataattgggactgcagtggaaaagttaataccactttgtcctgcttga 310
Query: 181 ttcagatctaagaggaaaatggtcatttgtgtgaaagcaattctcattgctccaacctaa 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 309 ttcagatctaagaggaaaatggtcatttgtgtgaaagcaatcctcattgctccaacctaa 250
Query: 241 cattgtttcttcagcttttccttcttattgtgtgttggttcttgtggag 289
||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cattgttccctcagcttttccttcttattgtgtgttggttcttgtggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
