BAC Information

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BAC

Clone NameMSMg01-120K20
Chromosome5 (Build37)
Map Location 107,875,083 - 107,875,435
singlet/doubletsinglet
Overlap genenone
Upstream geneBarhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik
Downstream geneLOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120K20.T7 (MSMg01no120_k20.b1)MSMg01-120K20.TJ (MSMg01no120_k20.g1)
ACCAG330984AG330985
length751726
length of high quality
(start - end)
439 (115 - 553)---
definitionCHROMAT_FILE: MSMg01no120_k20.b1 PHD_FILE: MSMg01no120_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:12 2005CHROMAT_FILE: MSMg01no120_k20.g1 PHD_FILE: MSMg01no120_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAATTAAGGAGAAAAAAGAAGGAAAAACAAAATGGGGAGCGGGGGGGC
TTATXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGAGCGCGGAATT
CACTTCTTTCCAGGACTGGTTTTTTCCTTTCCCCTCTGCTTTCTGGTACT
CATTCAGTAGACCAGGCTGGCCTCAAACTCACAGAGGTCTGCATGGATCT
GCCTCCCAAGTGCTGGGACTGAAGGCATGCACCAGGATCAAGTTCTTATT
CATTTATTTATTCATTTGAGACAAGACCTCATTCTTCAAGCATTCATTCA
TGACAGAGTCTTTGTATGCAATCCAGACTGGCCTCAAACTTGTGATCCTC
CTGCCTCAGCCTTCTGATGCTGACTCATAGGCATATAAACCACATCCAGC
AGTGCATCAGTCTTGAGTTCGCCAATACAAAGCCTCAAATATTAACAAAG
CCATTTAAATGGACAGATTTGACTAGAGTATGGACATAATGAGAATATGC
ACATGCATTTTTAAAAAGTCAACTGTTTATCACAGTTGAATGTAAGATGA
GGCACTTACTGTAAAAATGCTTTAAATTCTGAAGCTTCAACTTTTTCTCC
CCCCAACAAGCTCATTTGTTAGGAAACCTCGATGCGTGCTCAATGAAACG
GGTAAGAAAGCCCGAAGCTCTCGGTTAACGATATCGCCTTGTGTACTTTG
AACCCCCACCCTCTGAACGAACGATTGCTGACCGTGTGAGTTACCTCCCT
N
CAAAACATTAAAAAAGGAGGAGCTATGAATXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTT
AGCTCTGTACCCCATTTTTAATTCGGGTATTAGGTTTTCTGGAGGCTAGC
TTCGTGAGGTCTTTGGATATTTTGGATATTATGCCTTTGGGAGATGGATG
AGTGGGGGAGATCGTTTCCTCAGATGTAGGTTGGGATTTTGGTTTCTTGA
CAGGGTCCTTTGGCTGATAGGAGCTTTTTAGTTTCATGTAGTCCCATTTG
GCAATTGGTGATTTTAGACCCTGAGCCATTGGGACGCTATGTTCATAAAA
ATTTCCCCTGTGCCAATGTGTTCATGGCTCTTCTCCACTTTCTTTTCTAT
TAGGGTCAGTGTATCTGGTTCATGTGGAGGTCCTTGATCCACTTGGACTT
GATCTGTGGGCAAGGGGATAGGTATGGGACCAGGAATATTATCTGGAGTT
GCATTCAGTACTATTCATTTTGGGTTCTTCTACATGCAGACCTTTATCCT
AAACCAGCACCATTTATTGAAAATGCTTCCCCACCCTCATGTTTGGCTTC
TTTGCCGCCGAGGGAGGGAAAAAAATTTGAGTGGGGGCATTTCCTGGTGT
TTCAATGCTATTCGAGTGACCTACCCTGGCGGCCTCTGTTCTAAGTAGTT
GCTGCGCGAGGAGACCGTTGACTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_k20.b1 MSMg01no120_k20.b1 CHROMAT_FILE:
MSMg01no120_k20.b1 PHD_FILE: MSMg01no120_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:12 2005
         (439 letters)



>mm_chr5_107874597_107875435
          Length = 839

 Score =  659 bits (341), Expect = 0.0
 Identities = 350/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 87  gcctcccaagtgctgggactgaaggcatgcaccaggatcaagttcttattcatttattta 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gcctcccaagtgctgggactgaaggcatgcaccaggatcaagttcttattcatttattta 780

                                                                       
Query: 147 ttcatttgagacaagacctcattcttcaagcattcattcatgacagagtctttgtatgca 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttcatttgagacaagacctcattcttcaagcattcattcatgacagagtctttgtatgca 720

                                                                       
Query: 207 atccagactggcctcaaacttgtgatcctcctgcctcagccttctgatgctgactcatag 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 atccagactggcctcaaacttgtgatcctcctgcctcagccttctgatgctgactcatag 660

                                                                       
Query: 267 gcatataaaccacatccagcagtgcatcagtcttgagttcgccaatacaaagcctcaaat 326
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 659 gcatataaaccacatccagcagtgcatcagtcttgagtttgccaatacaaagcctcaaat 600

                                                                       
Query: 327 attaacaaagccatttaaatggacagatttgactagagtatggacataatgagaatatgc 386
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 599 attaacaaagccatttaaatggaaagatttgactagagtatggacataatgagaatatgc 540

                                                                
Query: 387 acatgcatttttaaaaagtcaactgtttatcacagttgaatgtaagatgaggc 439
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 539 acatgcatttttaaaaagtcaactgtttatcatagttgaatgtaagatgaggc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)