BAC Information

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BAC

Clone NameMSMg01-120N05
Chromosome5 (Build37)
Map Location 98,838,934 - 98,839,352
singlet/doubletsinglet
Overlap gene1700007G11Rik
Upstream geneGk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120N05.T7 (MSMg01no120_n05.b1)MSMg01-120N05.TJ (MSMg01no120_n05.g1)
ACCAG331095AG331096
length714709
length of high quality
(start - end)
419 (184 - 602)78 (77 - 154)
definitionCHROMAT_FILE: MSMg01no120_n05.b1 PHD_FILE: MSMg01no120_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:24 2005CHROMAT_FILE: MSMg01no120_n05.g1 PHD_FILE: MSMg01no120_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXTACAAAAGAGGATCCGC
GGAATTCACAATTTCCCGATCTCACAAAGCTGACAAGCACTTAAAGAGTT
GTTCAAAGTCTTTAGTCATCACGGAAATGCCAATCAAAATGACCCTGAGA
TTCCACCTCACACCAATCAAAATGGGTAATGAGCAAAAACTCAAGTGACA
ACACATTCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGC
GGGGACTGCAAAGTGGTGCTTCCAAGGTGGAACTCAGTCTGCTGGTTCCT
TAGAAAATTGGAAATAGCTCTATCTGAAGACCCAGTTATAACACTCTACC
TTTCTTGGTAGTGTAACTTAGATCAATAAAATCTCTGAGCAGAAAAGTAG
GCTAAGTTCTCCTAGAAGGTTCTGGGAAAGAGCTTTGTCCCTTGCATGAG
ATTCCTGAGCCTGAAAGGAAAGGAAGGGTGAGTTGTGAGGTCAGAGGCAG
ACTGTAAAATGGCCTGCAGATCCCGGAGCAACCTGTAGGGGGCTCTGACT
TTATGTCCTACATTGCCTGTCCATTCCACATTCTAGAAAGTGTTGCCTTT
TTATGAGGCAATTAAAGTAAATTTTTGTCTCCTGTAACAACATCCACACC
CCTCAGGGTCTCACGACAGTAAGGAAGGAAAACCCCTAGAAGAAACAGTG
ATGTAATACAATTN
CGATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCACTCCTCCTCTTTATCCT
CTTCTTTCCTCTGACTCCTCCCCTTTTTCCTCCCATTTATCCCATTTATC
TGTAATCGCATGTCATGTCCTTAGAGAACCCTTGATGATCACCATTCCAT
GTCACTTTGAGTAATACACCAATGTGTAATTTCTGAGGAAATAGTGGACA
GAGTGCCACAGGCTGGGGCTACAAGTTTGCCATAGAACATAGTAATACCG
TTGGCAAGTCAATCAGGCCAAGTATTAGACTCCTGCCTGACGCTCACAGA
CTCATAGTGGATAGAGGGCACATGGAAGACCACCCCCCTCCATAGACTCA
CTGTAATGATAGAAGCAGAGTGATCCACAGGACCTGACCTTCCCGTCTGG
AAAGTTCTATAATCACCCCTGAAGACAGCCATTGCATAGGCTTGTTTGTG
CTTTACCCACTTTCTGACTCTGCCTTTGAATAAACCATCTGTCCTTGATT
TCCATCTGACCTTGATTTCCATCTGTCCTTGATTTTCTTCCTATCTGACC
TTGACTGTATGTCAGCCTGTGTAGAGCCCCATGATAACAGGCACATAACT
TGGACTTCCCATCTCATGACATCGGAGTTCCCATAAACTCTAACAGTCTT
TTTATTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_n05.b1 MSMg01no120_n05.b1 CHROMAT_FILE:
MSMg01no120_n05.b1 PHD_FILE: MSMg01no120_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:24 2005
         (419 letters)



>mm_chr5_98838734_98839552
          Length = 819

 Score =  756 bits (391), Expect = 0.0
 Identities = 412/419 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaactcaagtgacaacacattctggagaggatgtggagaaagaggaacactcctcca 60
           |||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 caaaaactcaggtgacagcacattctggagaggatgtggagaaagaagaacactcctcca 260

                                                                       
Query: 61  ttgctgcggggactgcaaagtggtgcttccaaggtggaactcagtctgctggttccttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgctgcggggactgcaaagtggtgcttccaaggtggaactcagtctgctggttccttag 320

                                                                       
Query: 121 aaaattggaaatagctctatctgaagacccagttataacactctacctttcttggtagtg 180
           ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct: 321 aaaattggaaatagctctacctgaagacgcagttataaccctctacctttcttggtagtg 380

                                                                       
Query: 181 taacttagatcaataaaatctctgagcagaaaagtaggctaagttctcctagaaggttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacttagatcaataaaatctctgagcagaaaagtaggctaagttctcctagaaggttct 440

                                                                       
Query: 241 gggaaagagctttgtcccttgcatgagattcctgagcctgaaaggaaaggaagggtgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaaagagctttgtcccttgcatgagattcctgagcctgaaaggaaaggaagggtgagt 500

                                                                       
Query: 301 tgtgaggtcagaggcagactgtaaaatggcctgcagatcccggagcaacctgtagggggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgaggtcagaggcagactgtaaaatggcctgcagatcccggagcaacctgtagggggc 560

                                                                      
Query: 361 tctgactttatgtcctacattgcctgtccattccacattctagaaagtgttgccttttt 419
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 tctgactttatgtcctacattgcctgtccagtccacattctagaaagtgttgccttttt 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)