BAC Information

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BAC

Clone NameMSMg01-121G19
Chromosome5 (Build37)
Map Location 50,549,750 - 50,550,008
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041659, EG433885, LOC666223, Gpr125
Downstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121G19.T7 (MSMg01no121_g19.b1)MSMg01-121G19.TJ (MSMg01no121_g19.g1)
ACCAG331543AG331544
length685711
length of high quality
(start - end)
44 (356 - 399)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no121_g19.b1 PHD_FILE: MSMg01no121_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:11 2005CHROMAT_FILE: MSMg01no121_g19.g1 PHD_FILE: MSMg01no121_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATTCAAAAAGGAGCGCGGAATTCACTCTTTTTCGTAAACACAGC
TTGAAGTCAAAGACTTTTTAAATAGGATTAAGTTTACACAACAAAGGAAA
ACTCCACAGCAAATGTTCAAGAGAAAACTAGCTATTCTTGTGCGGTAAGG
CACTAAAATTAAAGTCCTCAGAGAAGCAGGAACTAGAGTGCAGTTCTGTC
CAGACAACCATGTGACTCCTTTAGAGATTATGCAATTTTTAGGAAGAACC
GGGTCTTCAGAGGTTACCTAGGGTTAGTACCTGACTCTCAAATTCGATGC
GTTACCCATAATACTTTCAAATGTCTTATTGAATTCTGTCTCCTCCCACC
CCCCCGTAGAGTTTTCCCCCATATCTTAATGAATACCACATATTCTCAGA
TAAACTTTGGGTCTGGGCCGAAGGCTCGCTAAACGGGGGAATAGTATAAG
ACTGATGGGGAATAAAGGGGGTGGTATTTCAAGGACATTTGATAAATGTC
TTGTCTCCACTCAAGGCCGGAGACACTGCTCAGATACTAATCTTTCCGCC
CAGAATAAATAAGTAGCGTGAATAACAGCTTAACACGATTTAAAGGAAAA
AACGGCTTAGATGATTCAAAACTGCACTTGGGTTTTTTTTGGGTAGTCTT
AAAACTTTGACTGAGCAGAAAGGGAGGAAAAATAG
NATCTCGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTATTTATTATTTATTTTAT
TATTTATATTATTCTATTATTTATTTTCACAGTATGCATTCTATGTCCCT
CCCTCGTTTCCTCCACCCTTCCTTTTCACACTCTCTTTCCCTGTCAAATC
CTTCTGGCCTCCTGCAGAGCTTCATGTCTGCATATATGACTTTAGGTCTC
TAAGAAAACCTAGAAACAACAAGTGCAAGAAACTAACTAAATACTGTGGT
CTTCCTGAGACAGGTTTAATTAACTTAATACAGTCATTCCAAGTTTTTGC
TATTTTCTTGCAAACTATACAACCCCCCCCCCTTATATATGAAAAATACT
CATATATATATATATATATATATATATATATATATATACATATACACACA
CACACACACACAAAACTTTGCTTACCCACTCTTTTGTTACTGGATACCTA
GATCGGATTCATAATTTGTATATTCTGAACAATATTGCAATAAATATTGT
TGTGAAAATATTTTTGTAGTCTGTTGACTGGGAGCCCTTTGTCTAAATAC
CCAGAAGAGAGAGGTACCATTGCATCAAATGGTAGACTATTTTTTTTAGA
TTGAGACTCTTGCCACACTAAGTTCCATTGTACCTGGACCAGTTTATATT
CCAGTGACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_g19.g1 MSMg01no121_g19.g1 CHROMAT_FILE:
MSMg01no121_g19.g1 PHD_FILE: MSMg01no121_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:12 2005
         (287 letters)



>mm_chr5_50549498_50550185
          Length = 688

 Score =  462 bits (239), Expect = e-135
 Identities = 253/259 (97%), Gaps = 4/259 (1%)
 Strand = Plus / Minus

                                                                       
Query: 33  attctattatttattttcac---agtatgcattctatgtccctccctcgtttcc-tccac 88
           ||||||||||||||||||||   |||||||||||||||||||||||| |||||| |||||
Sbjct: 511 attctattatttattttcacacgagtatgcattctatgtccctcccttgtttccatccac 452

                                                                       
Query: 89  ccttccttttcacactctctttccctgtcaaatccttctggcctcctgcagagcttcatg 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ccttccttttcacactctctttccctgtcaaatccttctggcctcctgcagagcttcatg 392

                                                                       
Query: 149 tctgcatatatgactttaggtctctaagaaaacctagaaacaacaagtgcaagaaactaa 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tctgcatatatgactttaggtctctaagaaaacctagaaacaacaagtgcaagaaactaa 332

                                                                       
Query: 209 ctaaatactgtggtcttcctgagacaggtttaattaacttaatacagtcattccaagttt 268
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctaaatattgtggtcttcctgagacaggtttaattaacttaatacagtcattccaagttt 272

                              
Query: 269 ttgctattttcttgcaaac 287
           |||||||||||||||||||
Sbjct: 271 ttgctattttcttgcaaac 253


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)