BAC Information

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BAC

Clone NameMSMg01-121L09
Chromosome5 (Build37)
Map Location 12,130,775 - 12,131,049
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121L09.T7 (MSMg01no121_l09.b1)MSMg01-121L09.TJ (MSMg01no121_l09.g1)
ACCAG331755AG331756
length688692
length of high quality
(start - end)
275 (79 - 353)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no121_l09.b1 PHD_FILE: MSMg01no121_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:34 2005CHROMAT_FILE: MSMg01no121_l09.g1 PHD_FILE: MSMg01no121_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTGCGGCGCTAAACGACTACTATTCGGAGAGATCCGCGGAATTCCTA
AATATCCCCATGTTGATCTTCAGAGCACAAAAGCTAGACTCCCCCATAAT
GCTTTAATATCCATTCCCTGACAATTATCATAGGCACAGTTTCATTAATG
TTACATTCTGTTCTATTACCCTAATGCATTCAAAGATGTATTATTTCCCA
TGGTAATAAAATTGATACCTCCTCGGCAATATTATGAGAAAATGGAATAC
ATGATAGATAGTAGATTTTTTTTTAAAAATCATGTCAAACCACAGTTCTG
CCATTTACTAACTTTTGTTATAAATGAGCACTCTAACCATAGACTTCTTT
ACTCTTAAATGAATCGCCCCTTCCATGTAACATAAGTTTCAGAATTAAAT
AAATAAAGGCTCCCGATAAATCAACTGTATGAAAATCACGTACATGACGA
CATTTTATATGTCTTTCTGAAATCAAAATTCATAACATTTATATAATAAA
CCTTTACGACAATGGCATTTACATTCCATGTACAAGCGTTCCTCATATTG
ACTATATAGAGTCAAGAACACTTGGGTTCTCACAATGAAGTAGTTGCAAG
TGACATTTCCCAACACATCCCACTTATGGCATTTACCACATTTTTTTTAC
TATACAGTTCATTTGTTACAGATGGTCACTGATACACC
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACAGAGACTCACCTGCCTCATGCCTTCCAAGT
GTTGGGAATAAAGGCCTGCACCCCCAGCATTGAGATGAGATATTGAAATC
TTTTGATAATATGGCCAAAAGTAGTATGTTTGGAACATTTAAGGAATATA
TTTGTAGCCTTTTACAAAACTGCTATGCTGACTTCCATAGTGTCTGCATT
GGCTTGCACCCCCACAAGCAGTAAATACACTTTGCTATGTTCCCAGAATC
TTACCAGTGTTTGCTATAATTTGCCTTTATTCTATTTCAGTCATTGTAAT
TTGTTTATGATGCACCCCCACCAGAGTTTTAATTTGAATTTCCACAGAGG
CATGCCTAGAAGGATATCCAACCTATGGACATGGCATTATGACCTTATGA
GGGAGGGAGAAGACCCTCATAAAGGCAGGGTGAGGGAGGATGGGATAGGG
AGTTTCCAGAGGGGAAACCAGGAAAAGGAATAACCTTTGAAATGTAAATA
AATATAATATCCAATAAAATTTTACGAAAGAATTTTTATGATTGTATGAA
ATACTCCAATTGCAATTTGATGCTTGCAACCTGGAAGTGTAGGTAACTCA
TACCCAAAGAAAATACAATACAAATTCTAGACCTAATCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_l09.b1 MSMg01no121_l09.b1 CHROMAT_FILE:
MSMg01no121_l09.b1 PHD_FILE: MSMg01no121_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:34 2005
         (275 letters)



>mm_chr5_12130575_12131249
          Length = 675

 Score =  509 bits (263), Expect = e-149
 Identities = 272/275 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagctagactcccccataatgctttaatatccattccctgacaattatcataggcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagctagactcccccataatgctttaatatccattccctgacaattatcataggcaca 260

                                                                       
Query: 61  gtttcattaatgttacattctgttctattaccctaatgcattcaaagatgtattatttcc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcattaatgttacatcctgttctattaccctaatgcattcaaagatgtattatttcc 320

                                                                       
Query: 121 catggtaataaaattgatacctcctcggcaatattatgagaaaatggaatacatgataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggtaataaaattgatacctcctcggcaatattatgagaaaatggaatacatgataga 380

                                                                       
Query: 181 tagtagatttttttttaaaaatcatgtcaaaccacagttctgccatttactaacttttgt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtagattttttttaaaaaatcatgtcaaaccacagttctgccatttactaacttttgt 440

                                              
Query: 241 tataaatgagcactctaaccatagacttctttact 275
           ||||||||||||||||| |||||||||||||||||
Sbjct: 441 tataaatgagcactctagccatagacttctttact 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)