Query= MSMg01no121_n13.b1 MSMg01no121_n13.b1 CHROMAT_FILE:
MSMg01no121_n13.b1 PHD_FILE: MSMg01no121_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:45 2005
(482 letters)
>mm_chr5_9837799_9838680
Length = 882
Score = 924 bits (478), Expect = 0.0
Identities = 481/482 (99%)
Strand = Plus / Plus
Query: 1 ttgctgagagaattttgtgtaatttatacctccaaagtgtaataaaattctccatggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctgagagaattttgtgtaatttatacctccaaagtgtaataaaattctccatggaag 260
Query: 61 cttgaatgtattgttttagctgcacttagcagatgttgtactatggtgattttattaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaatgtattgttttagctgcacttagcagatgttgtactatggtgattttattaaaa 320
Query: 121 ttattaattataaaatttatgatttttattctgatactttcacaatgcatataatgtata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattaattataaaatttatgatttttattctgatactttcacaatgcatataatgtata 380
Query: 181 ttgatcatatgtatgctgttatcatcattcattcccaccctcctatttattagtattcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatcatatgtatgctgttatcatcattcattcccaccctcctatttattagtattcct 440
Query: 241 gttttttaaagactgaatagtattattatttacaatcttattactttgtttctgaaaatg 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gttttttaaagactgaatagtattattatttacaatattattactttgtttctgaaaatg 500
Query: 301 tgaagatacatatgtatatatacatatgttagcactatctaattcaattttttatactaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaagatacatatgtatatatacatatgttagcactatctaattcaattttttatactaa 560
Query: 361 ataaaatgtaaaattcatgagaattagtttagtttccctaatcatgtattgtgatgactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaatgtaaaattcatgagaattagtttagtttccctaatcatgtattgtgatgactg 620
Query: 421 ttccatgtatatatccatttttactactgcttatttcacattaattgggaaatggaagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccatgtatatatccatttttactactgcttatttcacattaattgggaaatggaagca 680
Query: 481 gt 482
||
Sbjct: 681 gt 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no121_n13.g1 MSMg01no121_n13.g1 CHROMAT_FILE:
MSMg01no121_n13.g1 PHD_FILE: MSMg01no121_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:46 2005
(624 letters)
>mm_chr5_9869339_9870363
Length = 1025
Score = 1166 bits (603), Expect = 0.0
Identities = 618/623 (99%), Gaps = 1/623 (0%)
Strand = Plus / Minus
Query: 3 aggcatggaaggaagttcattaaccattacatatttgtagttaatgttggaaaataaatt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 aggcatggaaggaagttcattaaccattacatatttgtagttaatgttggaaaataaatt 928
Query: 63 ctaatgctctaaggaataataagaatattatagctaaggaaagttactgcatattgaaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 ctaatgctctaaggaataataagaatattatagctaaggaaagttactgcatattgaaaa 868
Query: 123 taggtataaaatatttttaaataaatatttaaaatattttaagacaaagaactagtttca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 taggtataaaatatttttaaataaatatttaaaatattttaagacaaagaactagtttca 808
Query: 183 gaggtgatagatctgcaatatacactgaaagatgtcattagacacaaaaatatgtactga 242
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 807 gaggtgatagatctgcaatatacactgaattatgtcattagacacaaaaatatgtactga 748
Query: 243 aataacattgtgtacctcatgaatgtgtacagttgcattgcatcagttaaaaactctaat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aataacattgtgtacctcatgaatgtgtacagttgcattgcatcagttaaaaactctaat 688
Query: 303 attcttgattat-aaaaaaatgttttagaagagtaactctttacaagaaaacaaacaaag 361
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 attcttgattataaaaaaaatgttttagaagagtaactctttacaagaaaacaaacaaag 628
Query: 362 aaaaagagaaaaactaactccaagaagttcaagtattaagaatagagtaactagagatac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaaaagagaaaaactaactccaagaagttcaagtattaagaatagagtaactagagatac 568
Query: 422 taggaaataactcgctaatatgttctactcaaaaccttggacgagcatttctgtaaggaa 481
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 567 taggaaataactcgctaatatgttctactcaaaatcttggacgagcatttctgtaaggaa 508
Query: 482 agtgattgatctgtattctgattaattgttgagaaatggacaaaaaaatttgtaaaatac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agtgattgatctgtattctgattaattgttgagaaatggacaaaaaaatttgtaaaatac 448
Query: 542 gtagattaggatcatttctgtaatgtctaatatttgacataatctgagaagagataagct 601
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtagaataggatcatttctgtaatgtctaatatttgacataatctgagaagagataagct 388
Query: 602 ctatggcatagaaaaagaatgtc 624
|||||||||||||||||||||||
Sbjct: 387 ctatggcatagaaaaagaatgtc 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1025
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1015
Effective search space: 623210
Effective search space used: 623210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
