NCGGGTTATTNNNNAACATTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCCATTGTCTTGCCTCATACAAAAAAACAAACAAAACTG
CAGAAGATCACATAACTTACTACATAAAGAATAAAGATCAGGAGCCTGCC
GTTGTCAGGAGCCATTTTGTCTGCTTCTGTGAAAGTCTGCCTGTTAGGCA
GGGTCAAAACAGGTCAGGGTTTGCTGGCCTGACAGGATCTTCTGTGGGCA
GGCAGATTTCCTGGTGTGCTGACATATGGAACAGTAAGAGGAGATACACT
TGAGGCTCAAGGTGAGGGGCTGAATGCTCTATTAATCTTGGTGGAAGGAA
TAGGGAGGCCTAGATATCCTGTGTGTGTGTGTCAGCCATTGCCTCTGCTA
GCTTGTGATTTTGCTTCCCACGGCACTGTGGGGTATAAAAAGGCTATGAG
AAATAAACTCGGGGCTGCAATATTCACTGGATAGCCCTTCTGAATATATC
TTTTGTCTCTGTATCTTCTTTCTGCCTTTCCTATCATTAATCTTCACTCC
TGCCTAGAGGACTGTTTGACTTTATGCTGGTAGGCCGGCACATGCCACTG
TGGGGCAGCTGCCAGGAAGAGGCCACTGCCTTGGGAAGATCAGCTGGACC
AACTAGAGTGCCATCCAGGGCCAGATTCAGTCAATCCAGCACTCACTCCA
TCTACTGTGGATTGAAAGGAGGAGCAGGTACTGCAGAACCAGATCCAAAG
ACAAAAACCTGAAGCATTACAGTGATCAAAGAAGTCTTTACAATGATCCA
GTATTTGTGGTGTTTGAGAGATCAGAGGCCTTGAGCCAGACCAAAGACTC
ATAGCAATGAGTGTTTGTGTTTAGAGCTGTGTGGAACAAAAAATACACTG
AGTGTTGCTGTAGTTTCCAGTGATGGATAAATGTGTGTTGGAAGAAATGG
AACTTTTGGAGGGATTCTGAAACCCCTGTCATATCTGCCAGCCTGGAACA
ATCCCAGGAAGGCCCATGCTGGGGGTTCGGTGGGTCCATTGCTGCCCACT
GG

NGGTATTATTNNNNAATCACGTGTAGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTGATCTTTCCAAAACTTTT
ATCATGAATGGGTGTTGCATCTTGTCAAATGCTTTTTCTGCATCTAACAA
GATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATATTGGATTACAT
TGATGGATTTTCATATATTAAACCATCCCTGCATCTCTGGAATAAAACCT
ACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGC
GAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTC
TGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTA
ATAGTGGTTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTT
GTGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGAT
AGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGA
CTATTAATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGATG
GTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATT
TGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAG
AAGGATCTGATGGTGTTTTGGATTTCTTCAGTATCTGTTTTTATGTCTCC
CTTTTCATTTCTGATTTTGTTAATTAGGATTTTGTCCCTGTGCCCTTTAG
TGAGTCTAGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCCA
CTCCTCGTTTGGTTAATTCTTTGAATAGTTCTTCTTGTTTCCACTTGGTT
GATTTCACCCCTGAATTTGATTATTTTCCTGCCCGCCTAATCCTTCTTGG
GGTGAATTTGCTTTCCTTTTTTTTCCAGGGGCTTTTTAAAATGTCCTTGG
TCCAACCCTGCCTTAATATTTTGCCTCTCCCTCCCCGTTTCCTTTCTTCT
GGAAATCCACTTTCCAA

Query= MSMg01no122_b03.b1 MSMg01no122_b03.b1 CHROMAT_FILE:
MSMg01no122_b03.b1 PHD_FILE: MSMg01no122_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:07 2005
         (780 letters)



>mm_chr5_22383810_22384990
          Length = 1181

 Score = 1469 bits (760), Expect = 0.0
 Identities = 763/764 (99%), Gaps = 1/764 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  gaattctccattgtcttgcctcat-acaaaaaaacaaacaaaactgcagaagatcacata 76
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 809 gaattctccattgtcttgcctcatcacaaaaaaacaaacaaaactgcagaagatcacata 750

                                                                       
Query: 77  acttactacataaagaataaagatcaggagcctgccgttgtcaggagccattttgtctgc 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 acttactacataaagaataaagatcaggagcctgccgttgtcaggagccattttgtctgc 690

                                                                       
Query: 137 ttctgtgaaagtctgcctgttaggcagggtcaaaacaggtcagggtttgctggcctgaca 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttctgtgaaagtctgcctgttaggcagggtcaaaacaggtcagggtttgctggcctgaca 630

                                                                       
Query: 197 ggatcttctgtgggcaggcagatttcctggtgtgctgacatatggaacagtaagaggaga 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ggatcttctgtgggcaggcagatttcctggtgtgctgacatatggaacagtaagaggaga 570

                                                                       
Query: 257 tacacttgaggctcaaggtgaggggctgaatgctctattaatcttggtggaaggaatagg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tacacttgaggctcaaggtgaggggctgaatgctctattaatcttggtggaaggaatagg 510

                                                                       
Query: 317 gaggcctagatatcctgtgtgtgtgtgtcagccattgcctctgctagcttgtgattttgc 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaggcctagatatcctgtgtgtgtgtgtcagccattgcctctgctagcttgtgattttgc 450

                                                                       
Query: 377 ttcccacggcactgtggggtataaaaaggctatgagaaataaactcggggctgcaatatt 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttcccacggcactgtggggtataaaaaggctatgagaaataaactcggggctgcaatatt 390

                                                                       
Query: 437 cactggatagcccttctgaatatatcttttgtctctgtatcttctttctgcctttcctat 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cactggatagcccttctgaatatatcttttgtctctgtatcttctttctgcctttcctat 330

                                                                       
Query: 497 cattaatcttcactcctgcctagaggactgtttgactttatgctggtaggccggcacatg 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cattaatcttcactcctgcctagaggactgtttgactttatgctggtaggccggcacatg 270

                                                                       
Query: 557 ccactgtggggcagctgccaggaagaggccactgccttgggaagatcagctggaccaact 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccactgtggggcagctgccaggaagaggccactgccttgggaagatcagctggaccaact 210

                                                                       
Query: 617 agagtgccatccagggccagattcagtcaatccagcactcactccatctactgtggattg 676
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 agagtgccatccagggccagattcagtcaatccagcactcactccatctactgtggattg 150

                                                                       
Query: 677 aaaggaggagcaggtactgcagaaccagatccaaagacaaaaacctgaagcattacagtg 736
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aaaggaggagcaggtactgcagaaccagatccaaagacaaaaacctgaagcattacagtg 90

                                                       
Query: 737 atcaaagaagtctttacaatgatccagtatttgtggtgtttgag 780
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  atcaaagaagtctttacaatgatccagtatttgtggtgtttgag 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 780
Length of database: 1181
Length adjustment: 10
Effective length of query: 770
Effective length of database: 1171
Effective search space:   901670
Effective search space used:   901670
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)