Query= MSMg01no122_e14.b1 MSMg01no122_e14.b1 CHROMAT_FILE:
MSMg01no122_e14.b1 PHD_FILE: MSMg01no122_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:34 2005
(531 letters)
>mm_chr5_129545239_129546167
Length = 929
Score = 891 bits (461), Expect = 0.0
Identities = 514/533 (96%), Gaps = 6/533 (1%)
Strand = Plus / Minus
Query: 1 ggatcgcttacaatcagattcttcttgctggccaacatcagaagaaccactgaacaatag 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 729 ggatcgcttagaatcagattcttcttgctggccaacatcagaagaaccactgagcaatag 670
Query: 61 cacacattgcccagaagggtgttgtcaggagaggtggaggggacaagagttgtggagctg 120
||||||||||||||||||||||||||||||||||||||||||||| |||||| || | ||
Sbjct: 669 cacacattgcccagaagggtgttgtcaggagaggtggaggggacaggagttggggtgttg 610
Query: 121 gtaccttgtgagcacagagagcaacaagccgtggaagagtgaatgtccagaccccacccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtaccttgtgagcacagagagcaacaagccgtggaagagtgaatgtccagaccccacccc 550
Query: 181 -cccacacacacacacacatctatatgctgaagtccctgtgcaaagtgaggctgtgtttg 239
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 accc---cacacacacacatctatatgctgaagtccctgtgcaaagtgaggctgtgtttg 493
Query: 240 gagcaaggggttcactaaggttaagtaagggtgttcataagaacaggacctgaatcagcc 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 492 gagcaaggggttcactaaggttaagtaagggtggtcataagaacaggacctgaatcagcc 433
Query: 300 aattcacaaaagagaaactcgaatgtttagtttctcaaacaccagggagtaagtcacgta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aattcacaaaagagaaactcgaatgtttagtttctcaaacaccagggagtaagtcacgta 373
Query: 360 aatcggaggcactggggtgtcagggtcacgtctcctggagacatcagcactgaacagagg 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 372 aatcggaggcactggggtgtcagagtcacgtctcctggagacatcagcactgaacagagg 313
Query: 420 aatccaacagtgacctgcacatattggtcaatgggtttttgactagatgtcaaggcaata 479
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 312 aatccaacagtgacctgcacatattggtcaatgggtttttggcaagatgtcaaggcaata 253
Query: 480 cactgcatatcagaacttattttcaacaagttgattgac-ggactatctacat 531
||||||||| ||||||||||||||| |||||||||||| || ||||||||||
Sbjct: 252 cactgcataccagaacttattttcagtaagttgattgaccgg-ctatctacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 929
Length adjustment: 10
Effective length of query: 521
Effective length of database: 919
Effective search space: 478799
Effective search space used: 478799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_e14.g1 MSMg01no122_e14.g1 CHROMAT_FILE:
MSMg01no122_e14.g1 PHD_FILE: MSMg01no122_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:35 2005
(268 letters)
>mm_chr5_129423627_129424294
Length = 668
Score = 441 bits (228), Expect = e-128
Identities = 248/264 (93%), Gaps = 16/264 (6%)
Strand = Plus / Plus
Query: 3 ccttcctgtggggttcacagaggtggcaagcactggggtgaggtagttctccggctctgt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccttcctgtggggttcacagaggtggcaagcactggggtgaggtagttctccggctctgt 262
Query: 63 gatctatccccaccatcctcaccaggataggccttcaaatcccatctactccagctacag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gatctatccccaccatcctcaccaggataggccttcaaatcccatctactccagctacag 322
Query: 123 aaatgcctggaaatcatgtctgtccttccttttccaaggctagggataaataaactcttc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaatgcctggaaatcatgtctgtccttccttttccaaggctagggataaataaactcttc 382
Query: 183 ctttcttccttcttttctctttctctctctctctctctctctctctctctctctctcccc 242
|||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 ctttcttccttctt------------ctctctctctctctctctctctctctctctcc-- 428
Query: 243 atatatatatatatatatacatat 266
||||||||||||||||||||||
Sbjct: 429 --atatatatatatatatacatat 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
