BAC Information

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BAC

Clone NameMSMg01-122F11
Chromosome5 (Build37)
Map Location 138,612,216 - 138,612,539
singlet/doubletsinglet
Overlap geneMcm7
Upstream geneMuc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6
Downstream geneAp4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122F11.T7 (MSMg01no122_f11.b1)MSMg01-122F11.TJ (MSMg01no122_f11.g1)
ACCAG332228AG332229
length1,1551,142
length of high quality
(start - end)
324 (125 - 448)257 (194 - 450)
definitionCHROMAT_FILE: MSMg01no122_f11.b1 PHD_FILE: MSMg01no122_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:41 2005CHROMAT_FILE: MSMg01no122_f11.g1 PHD_FILE: MSMg01no122_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTATCTTNNNNNGCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCCCGCGTCCACTGGACCCTTTACGAAGTCCAGAGGCGGGGCT
TGCCAGATCGCTACCCTCCGCGATTGGTTGTTTTCGGCCGCCCTCCAAGC
GGAAGTAGAGGCGGGCGGAAGTGGCGCTACCCGATCTTGGGACTGTCGTG
TGTAAACAGTGTCCTTCCGCGCGGTGGCCTCGGAGATAGCTGCAGTAGGT
AGGGGCGTGCCTAGAATTGGGAGGCTAAGCGCCCGGTGGCGAAAGGTGGC
AGTGTGGTGGACCCGAATGGCCCTTTGGCGTTCTGGCCAATCCCCGCTCG
GCCACCCGTCTCGGGCGGAGGAATCCTGGGCTGTGAGGCGGCTGGAATCT
GGGCCCATGTGCTTCTTTGTTTACTAAGAGCGGAAGCAGTGGCGGGAGTC
TTTCATGACTGCAGAGGAGGCCTAGTGGCGGACGTCCTGGCGGGAGCCTA
AGAAAAAGAGTTATACTGGTAGAGCGAGAGCCGAGGACCTTAAGTCGATT
GGGAGTGAGCTGAGAGAATTGAAGAAACTGAGATTCCTAATTAAGACAGA
GTGTGGAATTCTCTTGGGAAGGTTGGGTAAGACTCTTGTAGCTGCCCGAA
GACCTATATTCTTCTCTGTGTAAAAACGGACTTGTGAAAAGGAACACTGC
CTACTTTGGGGAGAACTTGGTCGATTTGTTTTCAATGTTCATTTTAACTA
ACTAGTTCATATGTTTCGTCTTAAGTGAAATCAGTGTTCTTAGGTTTCTG
TTTACAGTTTTAAATAAATGATTCTAAAAGGGAAGGTTGATTTGTTTATT
TTAATTTATTGCCTACATTTATGGTGTGCTTGGAAAATCGTCTCTGTCTA
TTTTTATAGCTTTACCAATTGGTGTGCTTGTAACCCCTCGTTAGGAAACC
CTGTTTTCTCTTTCCCAACCTCTGTTGGGTTGGTTTCCCCATGGGTATTT
GAACTTCCCATTCCCTTGTGCTCAATTAGATGTGTTCTTTTTTCCCTCTT
CTACTTGTGTAAAAGAATTTGTGGCTTCTTTAAATTTTTCACAATTCTGT
AAACAAACAAATTCTTCTATACATAGTTTCTCCTCTCCATTGAAAGTCTT
TCTTT
CAGAATTNTNNNGACTCAGGGAGCGACAGTCCTGATAGAGATCATGTTTG
TCATCTGGAGCCATAGAACAGGGTCCATTATGAGTCATCAACTTACCTTC
GCCGACAGTGAATTCCTTTAGAAGCGCCGTCAGACCAGAAAAGAGATTTT
CTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACCCGGTGGAAGTCA
TCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTG
GAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGA
TGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTG
CCCGGTTATCCCTGGATAGCGCCTTGCCGGACCGCACCACCATCATGAAT
TTCTTCCACCTGCTGGAGCAGCATCAACTGGCCCGCCAATTGTTCAAGAC
CTTTTTTTTCTCCCCGGCCGAAGCAGGCGTCATGATGACACAAGGGAGCT
TGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAG
CAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCA
CTTTGGCATGAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCC
ACAGCCTGGTCTCCACCGCGGCCAACGAGCATGACCTCAATCAGCTGGGT
AATCTGCTGCATGGAGAGGAGCAATTTGTCTCATCCGATGCCGGCTACCA
AGGGGCGCCACAGCGCGAGTAGCTGGCCGAGGTGGATGTGGACTGTTTGA
TCGCCGAGCGCCCCGGTAAGGTAATAACCTTGAAACCAGCTTCCACCTTG
AAACAAAACGTCCCATCAACTTCCAAATACTTGAAATCCCTACTTCCGGG
TCCAGGTTGGTAGCACCCATTTTTCGCATCATCCAAGCGTACAGTTCGGC
TTTCTTAGAAAAACCAAAATACTAATGCGTTTGCTTAAAAAATGATTAAC
CCTCCTTGGGCGAAGTTTTATTCCACGGCTGGCTCCAAACCTTGTTTTCG
GTGCGGTAATCAAAATGTATCCGCGTTCTGGTGGTTAAAAAATTCTCCCC
CTTAAAAACTTGTGTGTAATATCGCTCCTTTATATGTGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_f11.b1 MSMg01no122_f11.b1 CHROMAT_FILE:
MSMg01no122_f11.b1 PHD_FILE: MSMg01no122_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:41 2005
         (324 letters)



>mm_chr5_138612016_138612739
          Length = 724

 Score =  627 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggttgttttcggccgccctccaagcggaagtagaggcgggcggaagtggcgctacccga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tggttgttttcggccgccctccaagcggaagtagaggcgggcggaagtggcgctacccga 465

                                                                       
Query: 61  tcttgggactgtcgtgtgtaaacagtgtccttccgcgcggtggcctcggagatagctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tcttgggactgtcgtgtgtaaacagtgtccttccgcgcggtggcctcggagatagctgca 405

                                                                       
Query: 121 gtaggtaggggcgtgcctagaattgggaggctaagcgcccggtggcgaaaggtggcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtaggtaggggcgtgcctagaattgggaggctaagcgcccggtggcgaaaggtggcagtg 345

                                                                       
Query: 181 tggtggacccgaatggccctttggcgttctggccaatccccgctcggccacccgtctcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tggtggacccgaatggccctttggcgttctggccaatccccgctcggccacccgtctcgg 285

                                                                       
Query: 241 gcggaggaatcctgggctgtgaggcggctggaatctgggcccatgtgcttctttgtttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gcggaggaatcctgggctgtgaggcggctggaatctgggcccatgtgcttctttgtttac 225

                                   
Query: 301 taagagcggaagcagtggcgggag 324
           ||||||||||||||||||||||||
Sbjct: 224 taagagcggaagcagtggcgggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)