BAC Information

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BAC

Clone NameMSMg01-124B06
Chromosome5 (Build37)
Map Location 17,207,061 - 17,207,429
singlet/doubletsinglet
Overlap geneSema3c
Upstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927
Downstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124B06.T7 (MSMg01no124_b06.b1)MSMg01-124B06.TJ (MSMg01no124_b06.g1)
ACCAG333523AG333524
length1,2141,230
length of high quality
(start - end)
332 (128 - 459)626 (120 - 745)
definitionCHROMAT_FILE: MSMg01no124_b06.b1 PHD_FILE: MSMg01no124_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:41 2005CHROMAT_FILE: MSMg01no124_b06.g1 PHD_FILE: MSMg01no124_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGATCTTATNNNAGACCAATGGGCGCTATAGACTCCTATANGGAGAGGA
TCCGCGGAATTCCTTGGTGATGAACAGCCGTATGGAAGTGTAAGCTGAAC
AAATCCTTTCCTCCCCAACCTTTTTCTTGGTCATGATGTTTGTCCAGGAA
TAGAAACTCTGTCTAAGAAAAATTGGTACCAGCATATTGAGGTATTTCTG
TGACAACCTGAGCATGTTTTGGGGAGGACTGTAGAAGGACTTTGGAACTT
TAGGCTAGAAGATCTGTTCAGTGTTAAGAGCTCTGTCAGATGTTGTATAG
GAGCTTAGAAGATAATGTTGAGAACAGTGTAGAAGATGGAGGCCTGGCTT
GTGAAATTCAGAGGGAAAATTAAAAACTCTTTTCAAAGCCATTGCTATTT
TGATTGTGAAGATTCTGTAGTTCTGGTTAGCTGGGGCTGAAGAATCAGCT
GTGATTAACATGATACCACCAACTACTAAAGCAAAAATTTTGCATTGCTA
TTGACTATTGATGGTGGTTAGCTGAAGCTAAGAAATTAGCTGTGATTAAG
AAGAGACCGGCATCATTGAGGTAAAATCTAGGAAGTGTTTTCTGAGAGCA
CAGAGGCTGTGTTCCAGAGATAGCCAAGGTTGTACCTTGTGCTCTGACTG
GACTTGGTAATGTTTAAGAGTCACCCAGGTGGTACTAGTTTTGAAGGCAT
GAAGGGGTCATGAAGAGCAGCTGAGGTTTGGCACTGTGAGAGGTAATGGA
AGGCCTTTGGTAAAGGTGTAGCCTCAGTAGCATTTGATGTCCCAGGACTG
AAGGGGTCATGCAAAGGAGTTTGAGGCATAGCACCTTGAAGAGAGCCTGT
GAGAGGCTATTGCTGAAACCTAGTTTACGCTGAAGATGGCAGCATTTTGG
AGATGCCCGTTCCATGATTGAACACCAAGAACATCAACAGCAGTGGAATA
CGGGCATCTGGGACCTAAAGGACAAGGTGTGTGTTACAAAGGGCTAAATC
TGGAAAAAGTGACCCAAGCCCCTTGAAGGAACCCCCAAAAATGTTGAGTT
GGATTCCCAAACTTTGGAATGAATGGGAGAACCCATTTTTTGCTTTTGAA
ATGGGAACCTTTTCCCCTGAATATTTTTCCCTCCTTTAAAGAGAATCTTT
TTTATATATAAACCCCACCTTTTTAAAAATCTTTTTATTTATAATAAAAC
TTTGTTATTTCTTA
TTTTTTTTACCATTGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCCTTTAAAGCTGATTGAATTAGTTTTTAATCG
CTACATACCCCATTTATTAGCAATTTAGTGTTTTTGAATAGCACACATTG
CTCCTCTTAGTATTATGGTGACTAGAAATTCAACATGGATATCAGTATGC
CAAAATAAATATTTTCAGCCTTATATTCTGGATTTTCTAAGGAGAACTGG
TTTCCTGTGTTTTACAATTGTTTAGAGACTTCTATATTTCTCCATACATG
ATTGCTCTCTTCCATCTCCTGGGACATCAGTGTTACATTTTTGACATAGC
TTCCTATGCCTTCCATCTTTTTTTTTACTATAGCCAAGGGCAATTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCCTTCTTAGAGACACAA
GTTTGTGTTGAGCACACTCACACTGTTTGCAAAAATGTCCCCCTTCTCAA
GGTCAGAAACATTATACACACCTGGGAAACCCTTTGCTAATTAAGTGCCA
TCATCTCCAGTTTGACCTTTGAGGAAGAGATATTTGGGTGTTCAATATTC
CGCAACTGCATGAGTGGGAAAGAAAACTAAGCATGCATATTTGAAAAGTA
AAACATACAATTTTAGTCTCATACCCTTAGCCTCAGACATTCTGTGTTAA
AAAATTTTCTATTTTTTTATGTCCACCGCATTATAAAAGCCCTTCCTTCC
ACTTTTTCTAAAATTTTAAACATTCCCAAGAAACAACCATTTTGTTTTTT
GCCAAAACGGGCTTTTCCCCCTCCAAACCCCCCACTACGAACATTGAAAG
AACAACCTTCCGGCCCTTATGGGAAAAATCTATAACAAGGTCCCAGTTTT
GCTTGTGGTATTTTTCTTCCAAGGAACAAGGAACTTTTTGAAGCCTTGTT
CCCCCAAGAAAACTCGTGGCATATACTTGCTCAAACCAAAAAAGCCCCTC
AAGACGTGGGGGAATTTTCTGTCCTGGACACACCCCTTAATATATCACAA
ATTTTCTTTAATAATCCTCGCCTCTTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_b06.g1 MSMg01no124_b06.g1 CHROMAT_FILE:
MSMg01no124_b06.g1 PHD_FILE: MSMg01no124_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:41 2005
         (626 letters)



>mm_chr5_17206404_17207429
          Length = 1026

 Score =  462 bits (239), Expect = e-134
 Identities = 366/485 (75%), Gaps = 116/485 (23%)
 Strand = Plus / Minus

                                                                        
Query: 142  tttacaattgtttagagacttctatatttctccatacatgattgctctcttccatctcct 201
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1026 tttacaattgtttagagacttctatattcctccatacatgattgctctcttccatctcct 967

                                                                        
Query: 202  gggacatcagtgttacatttttgacatagcttcctatgccttccatctttttttttacta 261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  gggacatcagtgttacatttttgacatagcttcctatgccttccatctttttttttacta 907

                                                                        
Query: 262  tagccaagggcaattctttctttctttctttctttctttctttctttctttctttctttc 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  tagccaagggcaattctttctttctttctttctttctttctttctttctttctttctttc 847

                                                                        
Query: 322  tttctttctttctttctttctttctttctttctttctttctttctttctctctctctctc 381
            ||||||||||||||||||||||||||                                  
Sbjct: 846  tttctttctttctttctttctttctt---------------------------------- 821

                                                                        
Query: 382  tctctctctctctctctctctttctttctttctttctttctttctttctttctttctttc 441
                                                                        
Sbjct: 821  ------------------------------------------------------------ 821

                                                                        
Query: 442  tttctttctttctttctttctctccttcttagagacacaagtttgtgttgagcacactca 501
                                  ||||||||||||||||||||||||||||||||||||||
Sbjct: 820  ----------------------tccttcttagagacacaagtttgtgttgagcacactca 783

                                                                        
Query: 502  cactgtttgcaaaaatgtcccccttctcaaggtcagaaacattatacacacctgggaaac 561
            ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 782  cactgtttgcaaaaatgccccccttctcaaggtcagaaacattaaacacacctgggaaac 723

                                                                        
Query: 562  cctttgctaattaagtgccatcatctccagtttgacctttgaggaagagatatttgggtg 621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  cctttgctaattaagtgccatcatctccagtttgacctttgaggaagagatatttgggtg 663

                 
Query: 622  ttcaa 626
            |||||
Sbjct: 662  ttcaa 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 158
Number of extensions: 50
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)