BAC Information

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BAC

Clone NameMSMg01-124B16
Chromosome5 (Build37)
Map Location 15,112,720 - 15,113,045
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124B16.T7 (MSMg01no124_b16.b1)MSMg01-124B16.TJ (MSMg01no124_b16.g1)
ACCAG333543AG333544
length1,2211,232
length of high quality
(start - end)
333 (125 - 457)327 (121 - 447)
definitionCHROMAT_FILE: MSMg01no124_b16.b1 PHD_FILE: MSMg01no124_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:45 2005CHROMAT_FILE: MSMg01no124_b16.g1 PHD_FILE: MSMg01no124_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:45 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTTTTTTTNNNAGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTGTTTTTAAAGCCCCATTAAATGTGTAAATGTACCATAT
TTTCTGTATCCATTCCCCTGCTGAAGGACATCTGGGTTCTTTCCAGCTCC
TGGCTATTAAAAATAAGGCTGCTATGAACATAGTGGAACCTGTGTCCTTA
TTACAACATCTTCTGGATATATATCCAGGAGTGGTATACCTGGGTACTAT
GTCCACTTTTCTGAGGTACTGCCAAACGGACTTCCAGAGTGGTTGTACCA
GTTTGCAATCCCACCAGCAATGGTGCTCTTCTTTTTGCACAACCTTGCCA
GCATCTGTGGTCACCTGAGCTTCTGATCTTAGCCATTCTGACTGGTGTGA
GGTGTAATCTCAGGGTCACTTTGATTTGTGTTTCCCTGATGACTAATGAT
GTTGAACTTTTCTTTACCCGCTTATCCGCCATTCAAGTTTCCTTAAATAA
AACTTCTCTGTTTAGGTCTGATCCCCATTTTTAATAGGATTATTTAGTTC
TCAGGAGTCTAACTTCATGAGTTCTTTTTATATATTGAATGTTAGCCCTA
TATAGGATGAAGGATTGATAAAGATCTTTTCCCAATCTGTTGGTTGCCTT
TTTGTCTTATTGACAGTTTTCTTTGCCTTAAAGAATCTTTGCCGTTTTAT
GAGGTCCCATTTTTTGATTCTTAATCTTTCAGCATAAGCCATTTTTGTTC
TGTTCAGGAAAATGGCGGTCCTTGATCCACTTGGACATAAGCTTTGTACA
AGGAGGTAAGAATGGATCCATTTGCCTTCCTTCTACCTGATAACCGCCAG
TTGAACTCCCACCATTTGTTGAAAATGCTGTCTTTTTTCCATCTGATTGA
GTTTACCTCCTTTGTCAAAAATCAACGACCCTAAGGTGTGTGGTTTCATT
TCTGCGTTCTTCAATTCTATTCCACGGATTTATCCTGCCTCTCTCTGGAC
CAAATACCCTAAGTTTTTATCCCTATTGCTCCGTATTACCACTTTGAGGT
TTGCGTATGGTTAATTTCCCCCCAAAGATTTTTTTTGTTGAAAAATATTT
TTGTTTTTCCAAAATTCTTTTTCTTTTCCAAATGAATTTTTCAACTGTCT
TGTCTCCTAATTCTCTGTAAAAATCGTTTTCGTAACATTTTATAGGCTAA
ATCTCGTTCTGAATCCCTTTC
CTCTTCTNACTCATTGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCTTTTTCTTCTCAGGTACAACTGGGTCTT
TGTCAAGTTGACCTTTTGAAAAAACATATCGTGCAAATGAAACGGAAGCA
GCATTGAAAGTCTGAGTAGTCGGTGGGCATCCCTGCACATGTGCCTGTGG
GTAGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAAT
CATGGTCCCTGTTCTGGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGT
TGTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCCGG
GTGGGGTAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTTTGTCTCCGT
ATCTCCTTCCATGGGTAGTTTGTTCCCTATTCTGACACTACTGCATATGC
CAGCTTTGTTTTGCTGAAAGTACCTTGATATAGCTGTCTTGTGAGGCTAT
GCCAGTACCTGGCAAACAGAACTGGATGCTCACAGTCATTTATAGGATGG
AGCACAGGGCCTCCAATGGAGAACCTAGAGAAAGCACCCAAGGAGCTGAA
GGGATCTTCAACCCTATAGGTGGAACAATAATATGAACTAACTAGTACCC
CCCAGAACTTGCGTCTCTAGCTGCATATGTACCAGAAGATGGCCTAGTCA
GCCATCATTGGTAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCCCC
AGTACAGGCTCCAGAAATGGTAGTGGTTGGTTGGTGGAGCAGGCCAAGGG
GAGGTTATAGCGGACTTTAGGTATAGCATTTGACATGTAATTACAAATAT
TTTATACTATTAATATTAATTATAATACTAACAATAATAATTACTAACGA
TCTTGAAAGGAAACATGCCCCCTCCGCATTGTGCTGGTCTTTATGATTGT
GCCAGCCCCCTGTTTCCATTAACAAAATAATCGCTCTCCATTTGCCCATG
GGAATCTTCTTAATGTTGGTTATTTTTCCCTCCCAGGCTTTATTTCCCTT
TCCTTAAATATGGTTTAAACATGTCTATCTGTGAATTTCCTTTAAATCTC
AAGGTAACCTTCTTTATGGGCATCTTTTTCCGAGAAATAAAAATTTTCTT
TACCACTTTCTTATGTTATTCCCTCATCAAAACCCTCTCCTGTGTGACTT
TATCTTTTTTCGCTTATATGGCTACCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_b16.g1 MSMg01no124_b16.g1 CHROMAT_FILE:
MSMg01no124_b16.g1 PHD_FILE: MSMg01no124_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:45 2005
         (327 letters)



>mm_chr5_15112519_15113245
          Length = 727

 Score =  553 bits (286), Expect = e-162
 Identities = 316/326 (96%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaacatatcgtgcaaatgaaacggaagcagcattgaaagtctgagtagtcggtgggcatc 61
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 202 aaacatatcgtgcaaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatc 261

                                                                       
Query: 62  cctgcacatgtgcctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cctgcacatgtgcctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggt 321

                                                                       
Query: 122 ctagtcaatcatggtccctgttctggtgctaaaccagattctggagaaagctctattgtt 181
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 322 ctagtcaatcatggtcgctgttctagtgctaaaccagattctggagaaagctctattgtt 381

                                                                       
Query: 182 gttaagacttgagaggagcttggtggctgattatgggatggatccccgggtggggtagtc 241
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 382 gttaagacttgagaggagcttggtggctgattatgggatggatcatcgggtggggtagtc 441

                                                                       
Query: 242 tctggatggtccatcctttcgtcttagctttgtctccgtatctccttccatgggtagttt 301
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||| |  |||
Sbjct: 442 tctggatggtccatcctttcttcttagctttgtctccgtaactccttccatggctttttt 501

                                     
Query: 302 gttccctattctgacactactgcata 327
           ||||||||||||||||||||||||||
Sbjct: 502 gttccctattctgacactactgcata 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)