BAC Information

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BAC

Clone NameMSMg01-124H17
Chromosome5 (Build37)
Map Location 86,600,063 - 86,600,466
singlet/doubletsinglet
Overlap geneUbe1l2
Upstream geneCenpc1, LOC100039521, AI586015
Downstream geneGnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124H17.T7 (MSMg01no124_h17.b1)MSMg01-124H17.TJ (MSMg01no124_h17.g1)
ACCAG333825AG333826
length1,2681,315
length of high quality
(start - end)
444 (71 - 514)337 (125 - 461)
definitionCHROMAT_FILE: MSMg01no124_h17.b1 PHD_FILE: MSMg01no124_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:38 2005CHROMAT_FILE: MSMg01no124_h17.g1 PHD_FILE: MSMg01no124_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGCGCTATAXXXXXXXXXXXXXXXXXXATCCGCGGAATTCCAGTCCT
GACTTCCTCCGGTGATAACAGCAATATGAGAAGCGTAAGCTGAATAAACC
CTTTCCTCCCCAACTTGCTTCTTGGTCATGGTTTTGTACAAGAATAGAAA
CCCTTAGCCGGGCGTGGTGGCGCCCGCCTTTAATCCCAGCACTCGGGAGG
CAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGA
GCTCCAGGACAGCCAGGGCTATTCAGAGAAACCCTGTCTCAAAAAACCAA
AAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAGAAAAGAATAG
AAACCCTTAGACAAGGTCCTTCCATACAAAATGTATGTTTTCTTATGTAT
CATCTTCCTTAGAGTTTTAAAATGTGTTGAAGTTAATTTCACTAACTGTT
GCTATGTGCAGTGCTTGCTGTTGAGATTTTTAGAGCAACCAGACACTAAC
TGCACTGTAAGCACCATCATATAATAAAGTCAGCATATTCACACAACATA
TACTAAAACTATATATAAACCCGTAGTATCCTATCATTTTGTTTCTATTT
TACACACTTTATTGCACTTGCTATTCTATGTTACACACAATGACTTTGGT
GGATTAAAGTTTCTGACTAAAAATGATAACGGGGTTATGCTCAGCCACTT
AATGGCTATGGCCAACACTTAAAAAGCTCTGTCTCAATGATTGTTTCCGA
GAATATGTTCAAAACAGTCCCCGCCTGATTGTCCATACTTGTATTCTCAT
ATATTCTCATGAAGAGGGAGGAAGCCATCTTTGGCTAATTTGGACCCGCC
CTCTAATTCATTATTATTATTATAATATTAATGACCACCCCCATTATCAT
TTTTTTGTTAAAAACACTTAAGGGGCATAAATTGGATTCCATAATATTTT
CTAAACTCAATTTTGGCTATCTTGTCCCGGTTAAAAAAATCCTCCCTCCC
ATCCTTTTGAATATTAGGTTCCAATGTTGATAGGTAAGTTTTTTAACGTA
AAACATCCCTTCCCTTCATTTTTGGAAAGGAATAACTCATAATGGGGTTA
TAATTACATGGGGGGTTTTTTTTCTCGTGAATTGTTCTACAGTAAATCTA
TTCTATCCTGTTTATGAGATTTAATCAGGACTCCTCTCCCGGTATTTTTT
TTCTGTTAGAATAAAAAAATTCCATCATACCTCCGCGGTATAAATTTCTT
TAAACCCTGGGTCTCCCC
TTTTTTTAAAGATTGGAGGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTTTTATAAAACCAGAGACACTGAAACA
TAGAGGAGAAAGCCCTTTAAAACCCTCGAGATATGGGTACAGGGGGAAAA
TTTCTGAATAGAAGGGCAATGGCTTGTGCTGCAAGATCCAGAATCGACAA
ATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGACACTGTCA
ATAAGACAAAAAGGCCACCAACAGATTGGGAAAGAATCTTTACCTATCCT
AAATCAAATAGGGGACTAATATCCAATACATACATACATACATACATACA
TACATACATACATACATACATACATATATATATATATATATATATATATA
TATATATTTTTTGAAGCTGGACTCCAGAAAATCAAATAATCCCATTAAAA
AATGGGGTTTTTATTTAAACAAAGAATTCTCACCTGAGGAATACTAAATG
GGTGAGAAGCACCTGAAAACATGTTCAACATCCTTAGTCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTA
AGATAAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGA
GGAACATTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAATTGGATTTAGTACTACAGGAAG
ATCCTGCAATACTTCTCCTGGGCATATATCCAGAAGATGTTCCATCCGGT
AAGAATGACACCATGTCTCCACTTATGTTCATAGCAGCCTTATTTATAAT
ATCCAGAATCTGGAAAGAACCCTAATGCTCCTTAACAGAGGATTGGATAC
TGAAAATGTGCTTCTTTTATCCAATGGAGTCCTACTCCGCTTTTAAAAAG
AATGGATTTTATGAAATTTCCTATGCAATGGATTGGTACCTTGAATGGTT
TTGATTCTTGATTTAGTTATTTTTTTTCCCATATGTAATTCTCCCAAATT
TGTATTGCATTTGATAAATATAATATTTACCCCTTAAACCTTAATATTCC
TCCCCTATTTTACAAATATTATTTTGCTTAAAGTGCTTTAAACTTCCAGT
AAATAATAATAATCCTATGTGGGTGAACCTTTTGCCCCTTTCTTATAAAA
TGGTGATACTAATACCTCCTTGTCATGGGATTTTTATAAATATAAATTTG
TGCTCTCTATTACAGAGGGATGGTACCTCTTTAGTATCTTGCCCATATCC
TGGATATCTATCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_h17.b1 MSMg01no124_h17.b1 CHROMAT_FILE:
MSMg01no124_h17.b1 PHD_FILE: MSMg01no124_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:38 2005
         (444 letters)



>mm_chr5_86599823_86600666
          Length = 844

 Score =  654 bits (338), Expect = 0.0
 Identities = 398/444 (89%), Gaps = 40/444 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaatatgagaagcgtaagctgaataaaccctttcctccccaacttgcttcttggtcatg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 gcaatatgagaagcgtaagctgaataaaccgtttcctccccaacttgcttcttggtcatg 300

                                                                       
Query: 61  gttttgtacaagaatagaaacccttagccgggcgtggtggcgcccgcctttaatcccagc 120
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 301 gttttgtacaagaatagaaacccttagccgggcgtggtggcgcacgcctttagtcccagc 360

                                                                       
Query: 121 actcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtga 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 361 actcgggaggcagaggcaggcggatttctgagttggaggccagcctggtctacaaagtga 420

                                                                       
Query: 181 gctccaggacagccagggctattcagagaaaccctgtctcaaaaaaccaaaaaaaaaaaa 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct: 421 gctccaggacagccagggctattcagagaaaccctgtctcgaaaaaccaaaaaa------ 474

                                                                       
Query: 241 aaaaaaaaaaataaaaaaaaaaaaaaaaagaaaagaatagaaacccttagacaaggtcct 300
                                             ||||||||||||||||||||||||||
Sbjct: 475 ----------------------------------gaatagaaacccttagacaaggtcct 500

                                                                       
Query: 301 tccatacaaaatgtatgttttcttatgtatcatcttccttagagttttaaaatgtgttga 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tccatacaaaatgtatgttttcttaggtatcatcttccttagagttttaaaatgtgttga 560

                                                                       
Query: 361 agttaatttcactaactgttgctatgtgcagtgcttgctgttgagatttttagagcaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttaatttcactaactgttgctatgtgcagtgcttgctgttgagatttttagagcaacc 620

                                   
Query: 421 agacactaactgcactgtaagcac 444
           ||||||||||||||||||||||||
Sbjct: 621 agacactaactgcactgtaagcac 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)