BAC Information

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BAC

Clone NameMSMg01-124M17
Chromosome5 (Build37)
Map Location 29,091,061 - 29,091,340
singlet/doubletsinglet
Overlap genenone
Upstream genePaxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124M17.T7 (MSMg01no124_m17.b1)MSMg01-124M17.TJ (MSMg01no124_m17.g1)
ACCAG334056AG334057
length1,2361,159
length of high quality
(start - end)
276 (99 - 374)279 (52 - 330)
definitionCHROMAT_FILE: MSMg01no124_m17.b1 PHD_FILE: MSMg01no124_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:22 2005CHROMAT_FILE: MSMg01no124_m17.g1 PHD_FILE: MSMg01no124_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTATAGGGAGAGGTCCGCGGAATTCTTTGTTTAGCTCTGAGCCCTATA
AGGCCCCCGGGGTTATTTGATTTTCTGGAGTCCACCCTTTTGAGTTCTTT
ATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCC
TTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTTCT
TTACAGAAGCTTCACAATTTTATGAGGTCCCATTTGTCGATTCTCGATCT
TATAGCACAAGCCATTGCTGTTCTATTCAGGATTTTTTCCCCTGTGGACA
CTTTGCCCCTTCTTAGAATTGGGAACAAAACAACCATGGAAGGAGTTACA
GAGACAAAGTTTGGAGCTGAGACTATTTTTTAGACCATCTAGAGACTGCC
ATATTCAGGGATCCATCCCATAATCAGCTTCCTAACGCTGGCACCATTGC
ATACACTAGCAAAATTTTGCTGAAAGGACCCAGATATGGCTGTCTCTTGT
GAGACAGTGCTGGGGCCTGTCAAACACAGAAGTGGATGCTTACAGTCAGC
TATTGTATGTATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCA
AGGAGCTGACCAGGTCTGTAATCCTATAGGTGGAACAACAATATGAACTA
ACCAATACCGCCCCCCCCCCCCCAGGAGCTCGTGTCTCTAGCTGCATATG
AATCGGAAGATGGCCTTGTCGTCCATCAATGTAAAGAGAGGCCCATTGCT
TTGGCAAAACTTTATATGCCTCAGTTACGGTGAATGGTCCTGTCCATTAA
TTGGTAGCGGGTGGCTAGCGGAATTGCTTGTTTCTCTCTTCTTTTCATTC
TTTTTCTCTTCTTTTCTCTTCTTCTCCCTTCTTTCTTTTTTTCTTCTTCT
ATTCTTCTTCTTTATTTCCTTTCTTTTCTTCTCTTTCTCTCTTTTTCTTT
CCTTTACCTCCTTCTCTAATTTCTTTTCTCTTTTCCTATTATCTCTCTTT
TTTCTTCTCTTTTCTCTCTTTTTTCCTATTTCTCTTTTCTCCTTCTCTTT
CTTTCTTATCCTTTTTCTCTACTCTTTTTCAATCCCTTCATTCCTATTTT
CCTTTTTCTTTTTCTTTCCTCTTTCCTTATTCCTTCTTCCTCCTCCTCTA
CTCCTTATATCTGTCTCCATACTTGCTACTTCATAAATGCTCTCTTTTCT
CATTTCTCATCTTCGTCTTATTCCCTCCTCCTTCCC
ATAAGCCGACGCCAGTTAAATGATGCTTGCTTGCATTACTTTGAAGCTGA
CGCTTTGGCCAGCATTCCTATGATGAGACAAGAAAGCCACAGGGGATGTC
AGTTAGACTGAAGGAGATACATTTGGTCCTGGTTTGAGCCTACTCTGCAG
TTCCCATCAATTACTGAAGGCAGCAGATACCTACGTCCAAAGCAGAGCAA
CATAATGAAAGGAGCTTTAACCTACTCTGCCCTCCAGGTTATAAGATTGC
ATCCTCAGGATTGAGTCATGCTAGGTGAAACAAAGAATATTTATTATATC
TATTTCTCAGTCACATCCATGGCCTCTTGGTTTTACCATGGCCTCAGAAT
TATCTTATAGCAGACACTTTCTGAGTGCCTAACAAAGAAATTATCTTATT
TTCTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTATT
CACTTTTCCTCTTCCCCTCTTCTCTTTTTTTCTATTCTCTTTTTCCTTTC
TTTCCTCCTCTTTTCTTTACTCCTTCCCTTTCTTTTTTTTTTTCTTTCCC
ATTTTTTTTCTCTCTCTTTCATTCTATTCTCTTTCCTTCTCTTTTCTTTC
TTTTTCACTTCTTTATCCTTTTCTTTCTTCTTTTATTTTTTTCTTCTTAC
CCTTTTCTCTTCTTTCTTTTATCCTTCTCTCCCTCCATCATCTTCTTCTT
CCTTCTCTTCATACTACTTCTTTTTCTCCTTCTTATTTCTCTTTTTTTTC
TTTCTTTTTTTCTATCTTTTTCTTTCTTTCTTTTCTTTGTATCTTATTTT
TTTATTACTTTCTTATTTCTTATTATTTATTTTTTCTCTATTTTTTTCCT
ATTTTTCCTTACTACTTTCTCTTCCTCATTTACCTTTCTTCTTTTATTTT
TCTCTTTCTTCTTTCTATTTTCTTTTTCTTCTCTTTTTTCACTTCTTTCC
TCTCTTTATCTTCTCCTTCCCTTTTTTTTTTATTTTTCTCTTTCATCTTC
TCTTCTTTTTCTCTCTATTTTCACCTTTTCTCCTCACCTTTCTCTTTTAT
AATTTTTTTCATTCTTCATCTCTCTTCTTTCCTTCTTTTATTTGTCTTCT
CTTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_m17.g1 MSMg01no124_m17.g1 CHROMAT_FILE:
MSMg01no124_m17.g1 PHD_FILE: MSMg01no124_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:22 2005
         (279 letters)



>mm_chr5_29090861_29091540
          Length = 680

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%), Gaps = 1/280 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctttggccagcattcctatgatgagacaagaaagccacaggggatgtcagttagactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gctttggccagcattcctatgatgagacaagaaagccacaggggatgtcagttagactga 421

                                                                       
Query: 61  aggagatacatttggtcctggtttgagcctactctgcagttcccatcaattactgaaggc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 420 aggagatacatttggtcctggtttgagcctactctgcagttcccatcaattactgagggc 361

                                                                       
Query: 121 agcagatacctacgtccaaagcagagcaacataatgaaaggagctttaacctactctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agcagatacctacgtccaaagcagagcaacataatgaaaggagctttaacctactctgcc 301

                                                                       
Query: 181 ctccaggttataagattgcatcctcaggattgagtcatgctaggtgaaacaaagaatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctccaggttataagattgcatcctcaggattgagtcatgctaggtgaaacaaagaatatt 241

                                                   
Query: 241 tattatatcta-tttctcagtcacatccatggcctcttgg 279
           ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 240 tattatatctattttctcagtcacatccatggcctcttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 680
Length adjustment: 9
Effective length of query: 270
Effective length of database: 671
Effective search space:   181170
Effective search space used:   181170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)