BAC Information

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BAC

Clone NameMSMg01-124N07
Chromosome5 (Build37)
Map Location 63,875,039 - 63,875,367
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124N07.T7 (MSMg01no124_n07.b1)MSMg01-124N07.TJ (MSMg01no124_n07.g1)
ACCAG334084AG334085
length1,2831,267
length of high quality
(start - end)
599 (122 - 720)333 (124 - 456)
definitionCHROMAT_FILE: MSMg01no124_n07.b1 PHD_FILE: MSMg01no124_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:27 2005CHROMAT_FILE: MSMg01no124_n07.g1 PHD_FILE: MSMg01no124_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTAACACTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCAGTTCTGCCCCTGGTACTCTAAAGTCTCTTTGAGTAAAAGTTAGGTCA
CTGGGCTTCCCTTTAAGCTACCATCACCAAGGAAGAAAAAAAGTTTCTGA
CCGTAGGAGAAACCAGAATAGATACTTAGAACTATAACTGAGTTACACCC
ATATACAGGAATTTACAATGGTTTAGGAAGTAGACCGGGCTATGGTTTTA
GAGTATTACATTATTCATGAGATGGTTAGCTAGAACAGAACTCCCTAGTT
AGCACCATGACTTGGGAGTGAAAGCCCTTGCCCTAGGAGTAAAAAGTTCT
CACACCTGGCATCTAAGACTATAGCTGACCTTAGATAGGGCTGACTCTGT
CTTTTTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCGTTTTCATTTCT
CTATTCTGTGTAAGAGTCATTAAACATCCAGTTACCTCGTTTGTACCTTG
CAGGTATGTCACCCAACTTCTTTATTGTCGTCTGCATAAAAAGTCTGATG
CTTGATTTGAAAAATACATTCAGATTGCATGCAACCTCTCCTGTGTGCGT
CTGTTTGTCACTTGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGATGG
CGCTGACAGCTGTGTTCTAAGCGGTAAACAAATAATCTGCGCATGTGCCG
AGGGTGGTTCTCCACTCCATGTGCTCTGCCTTCCCCGTGACGTCCACTCG
GCCAATGGGCTGCAGCCAATCAGGGAGTGACACGTCCGATGCGAAGGATA
ATTCTCCTTAATAGGGACGGGGTTTTCGTTTTCTCTCTCTCTTGCTTCTT
GCACTCCTGGCTCCCGAATATGTAAGCAATAAAGTTTTGCCGCCAAAAGA
TTCTGGTTTGTTGCGTCCTTTCCGGCCCGGTCGCGGAAAACTCTCTCTAA
AAACAGCCCCTCATCCCTACGTTTTGTCCCCCCCCCGACTAAAGACCCGT
TCCCCTACAATTAAGGTTCCCAGTAGGGGGTGTTGCTTCCCTCTAATGGT
CCTTTGATCTCTTTTCAAGGGATTTTATATCCCTCCTCTGAAATAAAGAT
AGTATTTTTTCACCAAGGGGGCTCTACTAAACTGGGTTGTTTTCTTGTGT
TAAGAAATGCGAATACAACCCTTTCCTTATTCCTTTTGTATCAATGGCTC
AATCTTAAGTGGCTTCAAAAAATTTCCCTTTACCACCGATAAACCCTGTA
TTCTTATTTTGTCTACAGTGCTGGTCAAACTTN
NTTTAAAAACATTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCTTTTAAAACTTGCCTTCTGACTGAGTTTT
GGAGAATTGCCCTTGAAAGACCCCACTGAATGATAAGCTCTCACAGGGGA
AATTATATGATTTTTTTTATCTGCTTGTAGAACCCCATGTGCAGTTGGTT
AATTTGGCAATCAATCAGATGTGAAGGAAGATGAAAATTACATTAAAAAT
AATTAACTAGCCCATTCTAATCTGAATCTTCAACCAGGATGAGGAAGTAG
GTTGTCACTTTTCACCAAGATTTTCTCACAATTATAGTAAAGTGATAACT
CATGTGTCATGGAGACAAGGAATTGCTGCTAGAGTTCAATGCTACCTTGA
TTTTTTAAGGCAGCCATTAGAAACTAAAAAGGGGGAAATATTTTCTCTCC
TTATTTTTACTATCTGCACCTAAAATGGTTTTGTGTAATGAAACAAAAGA
CAGGTTGTTTTCCATGGGCATTTTTAAATTTAGACATCTGTAATCTATTC
TTCCTCATTAAAAAAAAAATCTAATCTGTCATCTGAGTTGAGCTCAGTGG
GTAAATGAATCGCTGCACAAGTGCAAACACCTGAGTCAGATCCTCATTAC
CACAGAAAGTTAGGCCTGTAGGCCCAGGTCTATAACCAGGACTGTGGAGT
GAAGACAGGGATTCCAGTCTATCCAATATGAGAGCTTCAGATTCAGTGAA
TGAGCAAATTACAAACAATAATGTGGAGAGCAATGGAAGAAGACAACAAC
ATCAACCTTTGGGTTCTTCATGCATATACATATATATGCACTCATGTACA
CACACATTAATGTCAGGAACCATTCTGGAAAAGGCTAAGGCTTCCAGGTG
ATTTTCCTGGAGGGGGCCCACATTTTTGCTTTGCCCTAAAATGGGGGAGC
CTCTGAAAAAAATGATCCCAAAAAATTTCATTCTCAGATGCTTTTTTGGC
AGCTGAAATGCATTTCCTGTTCTATTTTCTTAGCCTAACTGATTCCTAGG
CATTAACCCCCCACTATTGAATCATAATTTTTACCAAATTTACACAAGAT
GAGCTTTTCAGAACTTATTGTCTTCTAAAATAATTAACCATTTTCCAAAT
ATTTCTAAAATTTTTTCTACATAAATTTTAGGAAAAAAAGTTTTTATAAA
GTGCGTTTTATTTATATTTCCCTAAACAAAATATCTAATCTTTTAAATAA
CATAAATAGTGTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_n07.g1 MSMg01no124_n07.g1 CHROMAT_FILE:
MSMg01no124_n07.g1 PHD_FILE: MSMg01no124_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:27 2005
         (333 letters)



>mm_chr5_63874839_63875570
          Length = 732

 Score =  545 bits (282), Expect = e-159
 Identities = 318/334 (95%), Gaps = 9/334 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgaatgataagctctcacaggggaaattatatgattttttttatctgcttgtagaac 60
           |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| 
Sbjct: 201 cactgaatgataagctgtcacaggggaaattatatgatttttgt-atctgcttgtagaa- 258

                                                                       
Query: 61  ccc----atgtgcagttggttaatttggcaatcaatcagatgtgaaggaagatgaaaatt 116
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ---gagaatgtgcagttggttaatttggcaatcaatcagatgtgaaggaagatgaaaatt 315

                                                                       
Query: 117 acattaaaaataattaactagcccattctaatctgaatcttcaaccaggatgaggaagta 176
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 316 acattaaaaataattaactagcccattctagtctgaatcttcaaccaggatgaggaagta 375

                                                                       
Query: 177 ggttgtcacttttcaccaagattttctcacaattatagtaaagtgataactcatgtgtca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggttgtcacttttcaccaagattttctcacaattatagtaaagtgataactcatgtgtca 435

                                                                       
Query: 237 tggagacaaggaattgctgctagagttcaatgctaccttgattttttaaggcagccatta 296
           |||||||||||||||||||||||||||||||||||||||||  | | |||||||||||||
Sbjct: 436 tggagacaaggaattgctgctagagttcaatgctaccttgagctatgaaggcagccatta 495

                                             
Query: 297 gaaactaaaaagggggaaatattttctctcctta 330
           ||||||||||||||||||||||||||||||||||
Sbjct: 496 gaaactaaaaagggggaaatattttctctcctta 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 732
Length adjustment: 9
Effective length of query: 324
Effective length of database: 723
Effective search space:   234252
Effective search space used:   234252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)