BAC Information

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BAC

Clone NameMSMg01-125F21
Chromosome5 (Build37)
Map Location 116,576,716 - 116,576,967
singlet/doubletsinglet
Overlap geneCcdc60
Upstream geneAA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798
Downstream gene4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125F21.T7 (MSMg01no125_f21.b1)MSMg01-125F21.TJ (MSMg01no125_f21.g1)
ACCAG334476AG334477
length814756
length of high quality
(start - end)
98 (60 - 157)252 (71 - 322)
definitionCHROMAT_FILE: MSMg01no125_f21.b1 PHD_FILE: MSMg01no125_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:23 2005CHROMAT_FILE: MSMg01no125_f21.g1 PHD_FILE: MSMg01no125_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGCGGCGCTATCGATCCTATAGTCGAGATCGGCGGATTCCTCTGC
CCTTGCACCCATCCCCCTGCTCGGTACCTCACGGAGTGAGAATTTAAAGC
CCTGCCAGCTTGTTCTTCTGATTCCAGCTGGATTCAGCCAACAGAGAACA
CCACAGAGAAGTAAAAGGGTGGAAGGTGAGAGAGGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGTAGAGAGATTTTGTTTTTTCTTCCTTCTTTT
TTTCTCCTCTTTTCTTATCCTTCTTTCATCTCTTCCCCTCTCTTTTCTCC
TTCTTTCTCTCTTTCTTTTTTTTTTTTTTCTTACTCTCCTCTTCTTCCCT
CTTCTCCCTCCTTATTTCTTTTCTGCCTTATTCCTTTCTTTCTTTTTTAT
TCTTTATCTCTCTTGTCTTTCTTTGCTTCTTCTTTTCCTTTTTCTCCTCT
CCTCTTTTCTCCTTCCCTTCCTTCTCTCCTTCCTTTCTTATCTTTTTCCT
TTTTTTTTGCTTCCTTCATTTCTCTTTTCTTCTTCATCTTTCTTATTCTC
GTTTTTTTCTCTTCCGTGTTCCTTCTCTCTATCCCTTTTATTTTCTCTCT
TCACTTGTTTCTTCTCTCCTGTTCTGTTTTCTTCTCCTCTTCTCCATTTC
TGCTCTTCTTATTCCCTCAGTTTCTTTTTCCGTTTTCTCTTCTCTCTTTT
TGCCCGCTTCGTTTTTTATTCTTCCTTATCTCCCTGTTCTCTTCTCCTTT
TCCCTTTCCCTTCTCGCCTTTCTACTTTCTCCTGCTTTCTCCTCTTCTGC
CCTTCCCGTTCTCT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCTAATCAACAGAGACAGTGGGTTTGCTCCAGGGGCTAAT
GAATGTCCAGCGCAGGGCGGTTCAGGGAGACAAGGGCTTGTTGAGAGCCA
CCATGGAAACTGATCCTTTTCACAAGACTCAAGAAAAGTGTTGTTTGAAC
TGTCAGTTTCGCTTACTATGCGTAGAAACAGCTATTTCTCGAGTGAGTTG
TGACACGGGCCAAAACATGGACAGGGTAAGGCAAGCGATGACAGCCAGCT
CTGTAGCTGGGACTGAAAGAGGTTCTAAGGCAGAAACCAGACTTGTACCA
ATACCCATCATGGCTGCTGCTTGTTGGGCTGCTTTTCTGATCCATTACAG
GCGGCGGGTGGGCGGGGGTGTCATCTTTGCCGTATCTCGTCGCCTTTTCT
GCTTCTGACCCCCACAACCACCACTAGCGCAGCCCCTGTGCTCATATCTC
CCCTTTTGATCATCTCATTGCTTCCCCTCCCTCATCCTTTATTCTCATAC
CGCCCCCCCTGTCCTTATCCTCTACCCCTCCTCCTCCCCTATTCTCCTTC
TCCTATTCCTTCCTCTTTCCCTCATCCACCCTTCCCCCCCCTCCCCCCAT
TTCTCACATTTCGCCTCCTCTTCTAATTTCCCTTCTTTCCTCCCCTCCTT
CTTCTCTCCTTCTCGCTCTCTTCTTCGCCCCCCTCCCCCTTCCCCTTCTC
TTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_f21.g1 MSMg01no125_f21.g1 CHROMAT_FILE:
MSMg01no125_f21.g1 PHD_FILE: MSMg01no125_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:23 2005
         (252 letters)



>mm_chr5_116576516_116577167
          Length = 652

 Score =  480 bits (248), Expect = e-140
 Identities = 251/252 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagacagtgggtttgctccaggggctaatgaatgtccagcgcagggcggttcagggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagacagtgggtttgctccaggggctaatgaatgtccagcgcagggcggttcagggaga 260

                                                                       
Query: 61  caagggcttgttgagagccaccatggaaactgatccttttcacaagactcaagaaaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagggcttgttgagagccaccatggaaactgatccttttcacaagactcaagaaaagtg 320

                                                                       
Query: 121 ttgtttgaactgtcagtttcgcttactatgcgtagaaacagctatttctcgagtgagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtttgaactgtcagtttcgcttactatgcgtagaaacagctatttctcgagtgagttg 380

                                                                       
Query: 181 tgacacgggccaaaacatggacagggtaaggcaagcgatgacagccagctctgtagctgg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tgacacgggccaaaacatggacagggtaaggcaagcgatgacagccagctctgtagctag 440

                       
Query: 241 gactgaaagagg 252
           ||||||||||||
Sbjct: 441 gactgaaagagg 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)