BAC Information

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BAC

Clone NameMSMg01-125I17
Chromosome5 (Build37)
Map Location 19,118,522 - 19,118,808
singlet/doubletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125I17.T7 (MSMg01no125_i17.b1)MSMg01-125I17.TJ (MSMg01no125_i17.g1)
ACCAG334603AG334604
length700732
length of high quality
(start - end)
296 (51 - 346)---
definitionCHROMAT_FILE: MSMg01no125_i17.b1 PHD_FILE: MSMg01no125_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:37 2005CHROMAT_FILE: MSMg01no125_i17.g1 PHD_FILE: MSMg01no125_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGGC
GATACATAGCCCCCCTGCTATATGACTCTTTCTCATGCTATAGTTCTGGG
AGGATTTAGCAATAAGCTAATACTATCTCTTTGAGATGCAAAGCTATAGA
AAGTAAAAGGGAAAAATAATTCAAAGTCAGAAAAGTTTAGTTCATGACAT
CATACATGATCCTCATGTAAAATCTTAATTCTCTTTACATGAGATGATCA
AATATCATCATTTATTACAATATATGACTTTTTAATATACTGCATCTAAA
TTATTCCTCTCTGTACATATTTTAAATATCAACAAATGGCCCTTATTTGA
TGAGTTTCCATACAGGCCTGCTTGTATATTTGATAAGGTATGATTTATCA
GCAGACAAAAAATTAGCTAAAAAGGCGGGGGGGGGGGTGATTTATCCCCA
CTTAATGCCCTTCTTACCGCCTAGGCTGACAAATATACTCCTAACTGCTC
TACCTTGATACTTCCTCTCAGCCCCCATCTAGGAACACCAGGCTTCCCTC
TTTACCCCTCCCTTCCTGTTCACTTGCTTGCATATATTTACCCCTCCTTC
CCCTTTACACAAATGAATCCCCATGCCTAGTACTGTTCCCCCCTTCTTTT
TTCTTTGCCTATACTCAAGCCGTATTGTCCCCTACTACCCTCCTCTCCCT

TACTCCNNNTACCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCCCCAACTCTCACCTGCGGAATAT
CGAATGGCCGAGAAGCACCTGAGAAAAATGTTCACATCCTTAATCTTCGG
GAAAATGCAAATCATAACAACCCCGAGATTCCACCTCACACCATTCAGAA
TGGCTAACATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGCA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACC
ACTCTGGAAAGCAGTCTGGCGCTTCCTCAGAAAATTGGACCTATTACTAC
TGGAGCATCCCGGAATACCTCTCTTTGTTTTACCCCCCCACACACGCTTC
AACCTGTAAGAAGGATATATGCTCCACTATGTTTATAGAAACCTTATTTA
TAACAGCCCGAGGGCGGAACGCAACCCCATGCCCCTCCTCGGCCGAATGC
ATACCCGAAAATGCGGTACATTCTACCCACCGCACTACCACCCACCCCCT
AAAAACAATGCCTTCCTCCACCTTCCCTCCTACTGCATGGACCTGCAGGC
CCCCCCCCCTGCCCGAGGTAACCCCATTACAAAACCACTCCCCCAACATG
TACCCCCTCGCCCATCGGATCATTACCCCCGAACTTTTAACTTCCCCCAG
GCTATACCATACCAGTTCCCTCACCGCCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_i17.b1 MSMg01no125_i17.b1 CHROMAT_FILE:
MSMg01no125_i17.b1 PHD_FILE: MSMg01no125_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:37 2005
         (296 letters)



>mm_chr5_19118318_19119009
          Length = 692

 Score =  474 bits (245), Expect = e-138
 Identities = 278/291 (95%), Gaps = 4/291 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   catagcccccctgctatatgactctttctcatgctatagttctgggaggatttagcaata 64
           |||| |||||||||||||||||    ||||||||| ||||||||||||||||||||||||
Sbjct: 205 cataacccccctgctatatgac----tctcatgctgtagttctgggaggatttagcaata 260

                                                                       
Query: 65  agctaatactatctctttgagatgcaaagctatagaaagtaaaagggaaaaataattcaa 124
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 agctaatactatcactttgagatgcaaagctacagaaagtaaaagggaaaaataattcaa 320

                                                                       
Query: 125 agtcagaaaagtttagttcatgacatcatacatgatcctcatgtaaaatcttaattctct 184
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 321 agtcagaaaagtttagttcatgacatcatacatggtccttatgtaaaatcttaattctct 380

                                                                       
Query: 185 ttacatgagatgatcaaatatcatcatttattacaatatatgactttttaatatactgca 244
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ttacatgagataatcaaatatcatcatttattacaatatatgactttttaatgtactgca 440

                                                              
Query: 245 tctaaattattcctctctgtacatattttaaatatcaacaaatggccctta 295
           ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaaattattcctcactgtacatattttaaatatcaacaaatggccctta 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 692
Length adjustment: 9
Effective length of query: 287
Effective length of database: 683
Effective search space:   196021
Effective search space used:   196021
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)