BAC Information

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BAC

Clone NameMSMg01-126B14
Chromosome5 (Build37)
Map Location 120,939,320 - 120,939,652
singlet/doubletsinglet
Overlap gene1300012G16Rik
Upstream geneLOC100039529, LOC100039542, Tbx3, EG433945, Tbx5, Rbm19, LOC100039609, Lhx5, Sdsl, Sds
Downstream geneSlc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126B14.T7 (MSMg01no126_b14.b1)MSMg01-126B14.TJ (MSMg01no126_b14.g1)
ACCAG335010AG335011
length711702
length of high quality
(start - end)
360 (43 - 402)333 (72 - 404)
definitionCHROMAT_FILE: MSMg01no126_b14.b1 PHD_FILE: MSMg01no126_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:21 2005CHROMAT_FILE: MSMg01no126_b14.g1 PHD_FILE: MSMg01no126_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGGGGTTCCTTGGCCAACCAACCTAGCCAAATCAGTGAGCACCAGGT
TCAGATGATGGGAGAAAAGAAGAAGGAGGGGCCAGAAAGATGGCTCTGGA
GGTAAAAGCTCCTACTGCTCTTGCAGAGGATCTGGGTTTGGTTCCCAGCA
CCTACCTGGAGGCTCACAGCCATCTGTAACTCCTGTCCCAGGGGCTCTGA
TACCTTTTCTGGCCTCCATGGACCTGCATTCACAAGGTACACCTAAACAC
ACAGGCATACAAACACATACACATAAAATAACAACTTACCAGGCAGTGGT
GGCGCACGCCTTTCATCCCAGCACTTGGGGGCAGAGGCTGGAGGATTTTC
TGATTTCTTTTTCCCCCCCCCCTACTGAGTGAGTTCCAGGACAGCCAGTG
TTACAACTAGAAACCCTGTTTTGTATACCCCTCTACATACTTATCTACAT
ATATACCTACATACTTATATTCCCATCTTCCGTTTTAATATCTACTATAA
TAGATACGATATATTTTCTCCTCGTCTTACGTTCTTTTTCTCTATGTCTG
ATAATCTGTGTATCGTTACCAGCTCCTCCCTATTTTTTTCTCTCACATAT
ACTACTCTCCTTTCTGTTTGTCCTTATAGCTCCCTTCCTCCTTGTTACTT
CTGTCCTTCTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGTCCTCTAGAAGAGCAGTCAGTGCTCT
TAACTGCTAAACCATCTCTCCAGCCCTTCATGGCTTTTTTTTTAAACACT
GGCTTAAGCTCACACCTGAATTCCTGTCACTTGGGGCGTGGAGGCAGGAG
AATATCCAAGAAGAGTTTGAAGCTAACATTGGCTATGGTGTGAGACTGTA
AATGCCTCCAAAATAAGTAAAACTTGAAAACACTCTCCTAGGTGGGTCCT
GCCAGCCTTCGGTTCTTTTTAGCCTCCTGTGTAAAGGAAGACTCAGGCCA
GCACCCTTCAGGTGCACAGGGGACTAAACGCAGGGGATTGGTAGGAACCT
GGTCCATCCGCTCAGCAGTCACAGACAGCTGGTTCTTGACGCCCTACTGT
GTCTCTGGTTAAGGTGGGAAGAGCTGACTGGTATTCGGCTGTCTAGATTC
TCCCATTGCAGGGCCACCCACTAGCTGCCAGGAGGTGGCCTTTTGCAAGT
TAAGGTTCTTAACTTACCACGGTCTCTGTTGATCCAAGTTCTGCTTGGCT
TAAGACCAGGCTCACCTTGAACTTGTGGCAGTCCTTCCTACCTCTAGAGT
CCTGGGTTATAGACATGTGCCACCACGCTTGTCCAGTGTTCTGTTCGCTT
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_b14.g1 MSMg01no126_b14.g1 CHROMAT_FILE:
MSMg01no126_b14.g1 PHD_FILE: MSMg01no126_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:21 2005
         (333 letters)



>mm_chr5_120938945_120939677
          Length = 733

 Score =  621 bits (321), Expect = 0.0
 Identities = 330/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtcctctagaagagcagtcagtgctcttaactgctaaaccatctctccagcccttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aggtcctctagaagagcagtcagtgctcttaactgctaaaccatctctccagcccttcat 649

                                                                       
Query: 61  ggctttttttttaaacactggcttaagctcacacctgaattcctgtcacttggggcgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggctttttttttaaacactggcttaagctcacacctgaattcctgtcacttggggcgtgg 589

                                                                       
Query: 121 aggcaggagaatatccaagaagagtttgaagctaacattggctatggtgtgagactgtaa 180
           ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 588 aggcaggagaataaccaagaagagtttgaagctaacatgggctatggtgtgagactgtaa 529

                                                                       
Query: 181 atgcctccaaaataagtaaaacttgaaaacactctcctaggtgggtcctgccagccttcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atgcctccaaaataagtaaaacttgaaaacactctcctaggtgggtcctgccagccttcg 469

                                                                       
Query: 241 gttctttttagcctcctgtgtaaaggaagactcaggccagcacccttcaggtgcacaggg 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gctctttttagcctcctgtgtaaaggaagactcaggccagcacccttcaggtgcacaggg 409

                                            
Query: 301 gactaaacgcaggggattggtaggaacctggtc 333
           |||||||||||||||||||||||||||||||||
Sbjct: 408 gactaaacgcaggggattggtaggaacctggtc 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)