BAC Information

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BAC

Clone NameMSMg01-126G02
Chromosome5 (Build37)
Map Location 97,386,526 - 97,386,768
singlet/doubletsinglet
Overlap genenone
Upstream geneCxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266
Downstream geneLOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126G02.T7 (MSMg01no126_g02.b1)MSMg01-126G02.TJ (MSMg01no126_g02.g1)
ACCAG335210AG335211
length707851
length of high quality
(start - end)
241 (43 - 283)41 (75 - 115)
definitionCHROMAT_FILE: MSMg01no126_g02.b1 PHD_FILE: MSMg01no126_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:44 2005CHROMAT_FILE: MSMg01no126_g02.g1 PHD_FILE: MSMg01no126_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAAT
TCACTCCGTAGCTCAGCCTGGCCTTGAGCTCATAAGATCTTCCTGACTCT
GCCTCTTGAGTGCTGGGATTAGAGGTACGTGTTTTCCATGCCTAGCTAGC
AGGCAGTTTATTTTAGAAAGTCTCAACAAATGCTGACGTTTGTTTGTTTG
CTTTTTTTGTTCTTGTTGTTCTATTTGGTTTTAAAATTGCATTTATTTAT
TTGAGGAGAGGTGAGATACATGCCACATGTAGAAGTCAGAGACAACTGTG
GGGGTTGGGCTCTGCCAGTTCACCAAGTTCACCAAGTTCTCCAAGAGCAC
ACTTATGTCATAAGGCTTGGCAGCTAGCGCCTTCAGCCACAGAGCTCATC
CAGGTGTCCACTGCCATCGGCTTTTTTTTTTTTTAATGTTATTAACCTAA
TGTTTACGTCTACTTACCCATCATTTACCACTTCCCCATAATCAGTTTTA
AAACTTTTTTTTCTCTTTTTGTCGTTGTCCTTTCGCTTTTTGCTTTTTTG
CTTATGTTGCCGATGCTGCTGCTGCTTCCGCCTCTGCCTTTCGCGTTTTT
GCCTATCGTTCTCAATGCTGCCGCTTTTATTCCTGCCGTTCACTTCTTTT
CTTTGCTTTCCCTCCTTTTTTTCTTTTTTTTCCCCCCTTCATATCCGCTT
TACCTCT
CCACAATACAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXATGTATCCACAAAATTCTCTGTTTAGTTCTGTACCTCATT
TAAAAAAAAATGCGCTATTTCGGCTTTTGTTCGTTGTTGTTTCGCTTGCT
TGCTTGCCTTCTACACCCTATATACAATACCACTTCCTCCCTCAACCCCC
TTTCTACTTTCTTTTTCCCCTTCCACCTCCCTACCACTAATCCTCCTTCC
ACTCCTCCATCTTCCCACTATTTTTTACCTCCACACTTCCCTTCTTATCT
ATCTCCCCTCACCTTCCATTTCCCCTCCTCCACATCTCTAATATAATTAT
ATTATAAAATTTCCTCTATCCCCCACCATCACCCAATCACTTTCATCCAA
ACAAACCCTAAATTACACTACACTCAAACATATAATCCACATACCTCTAT
ATCTTACTCCTCCCCTCCCCACCTACCACACCTAATTCCCTAACATCCCC
TAATCGAATATATCCCCATTCACACTCATATCCCATTTATACCCCACCCC
CATTACTCCCCCAATACAAACCCATCTATCAATCATAATACACACAAATA
AACACAATCCAAAAACACATTAATTACTCAAAATTCACACTAAAAACAAA
TAATTTACCCAATAATACCCACCATCAACCAACACATATACATATTTATT
ACCCTATCCCCAATAAATACCCCCAATTACATACCCTTTATTATATTAAC
TAACCACCACCATCTCTAATCCAACTTCACAACACACACATAACCCACAC
ACACACCCATACCCCTTACACACAAAACAAAATCTATATTAATCCCACAT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_g02.b1 MSMg01no126_g02.b1 CHROMAT_FILE:
MSMg01no126_g02.b1 PHD_FILE: MSMg01no126_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:44 2005
         (241 letters)



>mm_chr5_97386323_97386963
          Length = 641

 Score =  431 bits (223), Expect = e-125
 Identities = 236/243 (97%), Gaps = 5/243 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactccgtagctcagcctggccttgagctcataagatcttcctgactctgcctc 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactccgtaggtcagcctggccttgagctcataagatcttcctgactctgcctc 263

                                                                       
Query: 64  ttgagtgctgggattagaggtacgtgttttccatgcctagctagcaggcagtttatttta 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgagtgctgggattagaggtacgagttttccatgcctagctagcaggcagtttatttta 323

                                                                       
Query: 124 gaaagtctcaacaaatgctgacgtttgtttgtttgctttttttgttcttgttgttctatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaaagtctcaacaaatgctgacgtttgtttgtttgctttttttgttcttgttgttctatt 383

                                                                       
Query: 184 tggttttaaaattgcatttatttatttgaggagaggtgagatacatgcca-----catgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||
Sbjct: 384 tggttttaaaattgcatttatttatttgaggagaggtgagatacatgccatgtcacatgt 443

              
Query: 239 aga 241
           |||
Sbjct: 444 aga 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)