BAC Information

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BAC

Clone NameMSMg01-126I17
Chromosome5 (Build37)
Map Location 110,596,481 - 110,596,994
singlet/doubletsinglet
Overlap geneChfr
Upstream geneLOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812
Downstream geneGolga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126I17.T7 (MSMg01no126_i17.b1)MSMg01-126I17.TJ (MSMg01no126_i17.g1)
ACCAG335330AG335331
length752706
length of high quality
(start - end)		178 (66 - 243)514 (68 - 581)
definitionCHROMAT_FILE: MSMg01no126_i17.b1 PHD_FILE: MSMg01no126_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:58 2005CHROMAT_FILE: MSMg01no126_i17.g1 PHD_FILE: MSMg01no126_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGAGCGCGGAATT
CCTTCCAATACTCATACCAGGTGTTTTACAACCTCATGTAACGAGTTCCA
GGTATCTGGCTCCTCTGGCTTCTTTGGATATCCATACTCACATGCATGTG
TGGTCACCCACCCACCTGTGCGTCCCCCCCCCACACACTGGGGAACCATC
TCCTTTTCTGAAGAGAGAAAGGGTGGATGGGATGAAGGGAAGGTGAGAGG
TACTTTCTTCCCTCCCCTTTCTCACTCCACCTCCACCACTCCTCCTTATT
TTTCCCTTCCTTCCACTTTTCTTTTTTTTTTCTCCCCTCATTCCGACTCC
CCGTTCCCCAATCCCTTACCTCCCTCTCCCTACTCCTTTTTCCCTATTGA
TTTTTTTGGCCATATTTTTTCCCCCCCTCCGGGTGTTTCCATACCTTTCC
CCCGCCTTCTTCCTTTTCACATCTTACCCCTTACTCTCCTTTCCCTCTAT
GTCTTCCCTCCCCTACTCCCATCCTTCCCCCTTTCTCTTTTCCCCTTTTA
CCCTGTTTCCTACCCCCCACTTTATCTTTTTTTGCTGTTTTCCCCCTACT
TTTCCATACTATTTCCCCCCCCCCATAATCTTCTTTTTCCCCTCCCTCAC
TCATCACACCTTTATTTATCCCACCTACTTGCCCTATTCCTACTTTTTAC
CCCCCATTTATCCCCCATCTTTCTCCTTTTCTCCCCTTCCCCCTCTTTTT
TT

GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATGCCTTCTGACTTCTGCAAGTACTGACTACA
CATGTGGTACATACAGGCAAAACACTTATACACGCAATTTATTTTAATCC
TTGGGAACATAAACGCAAATATGTTCAAATCTGAAAAATCAATCTAAGCC
AGAATACCAGTGACCTATATGTTCTAGATAAGGAATAATTAACCATATTA
AATTCCTCTGACCCATGTATTTCAGATAAGGAATTACTAATTTAATTTAC
TTTAGCACAAGAGAATACTCTCTCCAATCTTAAAACTTTTGGGGGGATTT
TTAAATATTTAAAATTTTAATCCACGGGTGATTATTTTAGTAGCTGTGAA
CATGCGTTGCCCCTGGAGAGGACCAGGGTTCCCAGCGCCTACATGGTGGC
TCATGACTATCTGTAACTCTGGTGCCAGAGGATCCATCTTTGCACCTACT
GCACACATTTGATGCCCAGACATTAATGCACATAAACACTGATAAAATAA
AAATAAATAAAAATCCAGCTAAATTGGTATTTAGATTGGTTTTGGGATTA
TTTTCCAAATGTCTAACCCACTGAGTTGATGTGCTACTTTCCTACTAGCT
TGAACTGCGCCTATTTTGTCGTTAGAAAATGACCTTGTTTGTATAACGTG
TGTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_i17.g1 MSMg01no126_i17.g1 CHROMAT_FILE:
MSMg01no126_i17.g1 PHD_FILE: MSMg01no126_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:58 2005
         (514 letters)



>mm_chr5_110596281_110597194
          Length = 914

 Score =  940 bits (486), Expect = 0.0
 Identities = 507/514 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgccttctgacttctgcaagtactgactacacatgtggtacatacaggcaaaacactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgccttctgacttctgcaagtactgactacacatgtggtacatacaggcaaaacactt 260

                                                                       
Query: 61  atacacgcaatttattttaatccttgggaacataaacgcaaatatgttcaaatctgaaaa 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacacacaatttattttaatccttgggaacataaacgcaaatatgttcaaatctgaaaa 320

                                                                       
Query: 121 atcaatctaagccagaataccagtgacctatatgttctagataaggaataattaaccata 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 atcaatctaagccagaataccagtgacctacatgttctagataaggaataattaaccata 380

                                                                       
Query: 181 ttaaattcctctgacccatgtatttcagataaggaattactaatttaatttactttagca 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaatacctctgacccatgtatttcagataaggaattactaatttaatttactttagca 440

                                                                       
Query: 241 caagagaatactctctccaatcttaaaacttttggggggatttttaaatatttaaaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagagaatactctctccaatcttaaaacttttggggggatttttaaatatttaaaattt 500

                                                                       
Query: 301 taatccacgggtgattattttagtagctgtgaacatgcgttgcccctggagaggaccagg 360
           |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct: 501 taatccacgggtgattattttagtagctgtgagcatgcgttgctcttggagaggaccagg 560

                                                                       
Query: 361 gttcccagcgcctacatggtggctcatgactatctgtaactctggtgccagaggatccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttcccagcgcctacatggtggctcatgactatctgtaactctggtgccagaggatccat 620

                                                                       
Query: 421 ctttgcacctactgcacacatttgatgcccagacattaatgcacataaacactgataaaa 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgcacctactgcacacatatgatgcccagacattaatgcacataaacactgataaaa 680

                                             
Query: 481 taaaaataaataaaaatccagctaaattggtatt 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 taaaaataaataaaaatccagctaaattggtatt 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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