BAC Information

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BAC

Clone NameMSMg01-128J05
Chromosome5 (Build37)
Map Location 47,372,583 - 47,372,771
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128J05.T7 (MSMg01no128_j05.b1)MSMg01-128J05.TJ (MSMg01no128_j05.g1)
ACCAG336807AG336808
length773720
length of high quality
(start - end)
---191 (121 - 311)
definitionCHROMAT_FILE: MSMg01no128_j05.b1 PHD_FILE: MSMg01no128_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:43 2005CHROMAT_FILE: MSMg01no128_j05.g1 PHD_FILE: MSMg01no128_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATAATTTGCGGCCGCTATACTACTCTCTATCTTCTGAGGATCCGCGGT
ATTCTCATTATTTTCCTATGACTTATCATGGATTGTTTATCACTGACTTA
TTCTATTGTACTCTGATGTTACTCCTGGGGAGCGAGAGAGAGAGAGAGTG
AGAGAGAGAGAGAGAGAGAGCCAGCGGCCGCCCCCCTCCCCTCCTCCCCC
CCCCCCTCCCCCTGCCCCCCCCCCCCCCTCGTTCCTTCCTTCCTTTTCTT
TTCCTCTCCTCCGCCTTCTCCCTCCTTTTTTTCTCCTCTTCTCTTTTCTC
CTCCCCTCTTTCTTCTTCCTCTTTTTTTTTTCTTCCCCTTTCTTTTTTTC
TTCCCCCCCTCTTTTTTTCTCCCCTTTTTTTTTTTCTCTCTTCTCCCCCC
TTTTTTTCTCTTTTTTTTCCCCCCTTTTTTCTTTTTTCTTTTTTTTTCCT
CTTCTCTTTTTCTTCCCTTTTTTTTTTTTTTTTCTCTTTTTCGTTTTTCT
TTTTCTTTTTTTTTTTTTTTTCTCTTTTTTTTCTTTTTTTCTTCCTTTTT
TCTTCTCTTCCCTCTTTTTTTCTTTTTCTCTCTTCTTTCCTTCTTTCTTT
TTTTTTTTTTTTTTTTTTTTTCTTTTCTCTTCTTTTTCTCCTCTTTCTTT
CTTTTTTTTTTCCCCCTTTTTTCTTTTTCTTTCTTTTTTCCCTCCTCTCC
CCCCCTTTTTTTTTTTTTCTTTTTTTTCCCCTTTTTTCCTCTCCTCCTCC
CTCTCTTTTTTTTTTTTTTTCTC
ATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTACTTGAACCGTCCTTGGTGGATGACGTAG
GACTGAAACAGTGTAACCCCACTAATGATCAGGTAAGCTTGCTAAAGGAC
AATATTATAAAGATGTTTGTTCTAAGTTCCTGTTGGTCTTTATAATTGAT
TAAAACCCTGTGTACTCACCTCATTCTATCTTCCTGCAGTCCAAAGGCAC
ATGCCCACTTGGGTCATACTTTTGAGGTCAGAATGGGACATTTTACAGTA
ACTAAAAACCTTCTGACCTTTCATGGTACTTTTAAAGAACTGAATTGAAT
TTAAAATTTAAAATTCACCATCTTTTGAGTCTAGATTGAGATCTTAATCA
TTTTGCTTTACAGTTATGGAAACGACTGACTTTACTTGATCACTGTAAAA
TATACAACTTTGTGACCTTGTAATCCCTTCAGGCCTAAGTTAATTGTGAC
ATTGAACTGATTTTATTTGCCAAAGGAAACCAATTACATCCCTTTAAATG
GACCCTTAACTTTTAGAGAAATGATTTGATCATTTTGAATTTGGTATTTT
GAAAAAGTCCATAAAATTAAATTCTATTTATCACTCCTTTGTCCTTTGGA
ACTTGAATAGCAATTTATTTTTTTGCAACCTACAAGTTCAAATTTCTGTT
TTATTGTGTCCCCCATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_j05.g1 MSMg01no128_j05.g1 CHROMAT_FILE:
MSMg01no128_j05.g1 PHD_FILE: MSMg01no128_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:43 2005
         (191 letters)



>mm_chr5_47372383_47372973
          Length = 591

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaatgatcaggtaagcttgctaaaggacaatattataaagatgtttgttctaagttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaatgatcaggtaagcttgctaaaggacaatattataaagatgtttgttctaagttcc 260

                                                                       
Query: 61  tgttggtctttataattgattaaaaccctgtgtactcacctcattctatcttcctgcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttggtctttataattgattaaaaccctgtgtactcacctcattctatcttcctgcagt 320

                                                                       
Query: 121 ccaaaggcacatgcccacttgggtcatacttttgaggtcagaatgggacattttacagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaaggcacatgcccacttgggtcatacttttgaggtcagaatgggacattttacagta 380

                    
Query: 181 actaaaaac 189
           |||||||||
Sbjct: 381 actaaaaac 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)