BAC Information

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BAC

Clone NameMSMg01-128K12
Chromosome5 (Build37)
Map Location 106,461,230 - 106,461,464
singlet/doubletsinglet
Overlap genenone
Upstream gene5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723
Downstream geneLOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128K12.T7 (MSMg01no128_k12.b1)MSMg01-128K12.TJ (MSMg01no128_k12.g1)
ACCAG336867AG336868
length714714
length of high quality
(start - end)
235 (122 - 356)241 (78 - 318)
definitionCHROMAT_FILE: MSMg01no128_k12.b1 PHD_FILE: MSMg01no128_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:49 2005CHROMAT_FILE: MSMg01no128_k12.g1 PHD_FILE: MSMg01no128_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACAATTTGCGGCGCTATACGACTCCTATATCCAGAGATCCGCGGAATTC
CAACTGTTTCCAAATGCAAATACCAAGACACTCCACACTTTTGTTCAGTG
GTATAGACACTGGTAAACCCCAAGCCTTCACCTTGCTCCTGTGAGAACCC
TAAAACGCTGACTTTGGGGAGAAAATGTGGAGGCAGAAGACCAGCTGGAG
AGGGAAGGGAGTCAGATAAGTGGAAGGCAAACGAGAGGGTCTAGGCACAG
AACTGAAAAACATTAAATACAGTAATGAGATGTGTTATAACAGATACTAA
TAAAGGCATCTTTAGCCGTTCAGTGGTGGCACATGCCTTTAATCCCAGCA
CTTGGGAGTTAGAGGCACGCCCATTTCTGATTTTGAAGCCAGTTTGGTCT
ACAGAATGAGTCCCCCTACAGACAGAGCTATACAGAGAAACCCTGTCTCA
AAAAACAAACAAACAAACAAACAAAGCATCTTTAAAGATATCCAATAACT
TCAAGCACGCCATCCCTGCATTGTGAAGGCAAAAATCCCAAATAACATAT
CTGGAAACTCATTCACTGGTTAAAAGAAATGAAGATGTCCTTGGGTGGCG
ACAAGCTGTTTCGGAATCAGCTTTCTCCTGTAGTCCCATAAGTCGGCAAC
AATGGATTCCCATTACAGGGTAGAGAATTGCTGGGTAATGAACGGCACCT
TAATCGATCCATGC
CTCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAACCATGGCTACACAGA
GAAACCCTGTCTCGAAAAAAAGAACACACAACAGCAACAACAAACAAGTA
CGTGGGATGCAGGAGGATCAGAAATTCAAAGTCATCCTTGGCTACATAGC
AATTTTAAGGCCTATGACACATAGTCTTAAACAAACAAACAAACAAACAA
ACAAACAAACAAACAAACAAACAAACACCAAAGCCTTTGCCCAGTGTGAT
GTTGCAAGCCTTTAGTCCCAGTTCTTGGGAGGCAGAGGCAGGAGGATTTC
TGTGAGTTTGAGGCCAGCTTGGTCTACAAAGCAAGTTCTGGAACAACTAG
GGATGTTACACCCCCCAACCCTTGTCAAACCAAAAAACCCCAAGCCCCAT
ACAACAACATCAAAACCAACTAAACTAAAGCCTTCATTTCTTCAATGTTT
TCCAGGGGTCTGGAGAGAAAGCTGTGCTGTGCCACTGTGTTCTTGATCAC
GTTACCTTTGTAGTGTGTCACCATCAAGGCTGTAGGGACAGATGCTTGGA
GGCTTTTATTTTTGTCTGCTTTTGAGACAGGGCTTTATGAAACCCCGGTT
GAAATCCCACTCACTATGCACCTCAAGATGGTCCTGAACTTCCTAACCTC
CTGCCTTCCAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_k12.b1 MSMg01no128_k12.b1 CHROMAT_FILE:
MSMg01no128_k12.b1 PHD_FILE: MSMg01no128_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:49 2005
         (235 letters)



>mm_chr5_106461073_106461707
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagccttcaccttgctcctgtgagaaccctaaaacgctgactttggggagaaaatgtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aagccttcaccttgctcctgtgagaaccctaaaacgctgactttggggagaaaatgtgga 333

                                                                       
Query: 61  ggcagaagaccagctggagagggaagggagtcagataagtggaaggcaaacgagagggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggcagaagaccagctggagagggaagggagtcagataagtggaaggcaaacgagagggtc 273

                                                                       
Query: 121 taggcacagaactgaaaaacattaaatacagtaatgagatgtgttataacagatactaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 taggcacagaactgaaaaacattaaatacagtaatgagatgtgttataacagatactaat 213

                                                                  
Query: 181 aaaggcatctttagccgttcagtggtggcacatgcctttaatcccagcacttggg 235
           |||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 212 aaaggcatctttagccgggcagtggtggcacatgcctttaatcccagcacttggg 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)