BAC Information

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BAC

Clone NameMSMg01-128M15
Chromosome5 (Build37)
Map Location 133,402,969 - 133,403,518
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128M15.T7 (MSMg01no128_m15.b1)MSMg01-128M15.TJ (MSMg01no128_m15.g1)
ACCAG336968AG336969
length713743
length of high quality
(start - end)
555 (45 - 599)259 (74 - 332)
definitionCHROMAT_FILE: MSMg01no128_m15.b1 PHD_FILE: MSMg01no128_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:00 2005CHROMAT_FILE: MSMg01no128_m15.g1 PHD_FILE: MSMg01no128_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCCTTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTTTCCTCTCT
CTCTCCTCTTTCCATTACATGGCACAGAGGAGGCCACACTTACCCAAGCC
AAGCAACCATAATTTCCACACTAGTGGATCAAGACAAGAGACCCTGTTAT
AGCTGCTCCTGCACAGAAGCAGGGATCCACCACGGTTACTTCTGCTTTGT
ACAAAAGCAGAGAGCCAGTCCCCACTGCAGAAGGGAAACACAGATACTTG
TAGGCTCATAGGAAGAGGGATGGAGAGAGCTAACCAGGTGGCACACCCTA
AATCTAAAATAACCTCACATGCCCTTAGAGACTACAGCGCTTACTTCCAA
ACGTCTGTCTTCGTGCACTTGAAGCGTCTATAATAGTTGCAAATAAACTT
TGGTTTTGTTCTGCTCTGAGCGCTTGCCCTATTTTTAAATTCTTTAAACG
ACAGAGAAAAAGAAGCCATCAAACTTCACAAGCATCATCCTTGCTGTGAT
TTACAAAGGATGTTACAGGCTGAGAGAAAGGAAGCTGATGAGCATCACGC
GGGAGCTTCACGGGGAGAGTCCCAGCACCAACAGCCACAGTGAGGGCCCT
GAAGAGGGGCTTTCATCCGGAGAGACAGTCATCGTGAATAACATGATGTG
GGTCCTGAAGGGA
AATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATGGGTCAGGAATTGGATAGAGATAG
CTTGTCTTTGACCCATATGGCCTGGGCCTCAGATGAAAGAGTCACCGGCT
GGGGGATCATTTGTCATCTGGAGACTAATGTCATCACAGTGGTACTAAGT
GGACAAAGGTAATTACACAAGCCCATATAATGTATGATTCTGTTCATATG
AAGTTTCCATAACTGGGAAATCTGTTGAGAGAGTGAAGTGTATTGGGGGA
TAGGACTGAGTAGGAATGGGAATAGAGGATTATAAGTCCCTTCCCTTTTC
CCTTTTTTTTCTTTTTCTCCCCCTGTTCCCCTTTTCTTTCTCCCTTTTTT
TTTTTTTTTTTTTCCCCCCCTTTTTTTCACCTATTTTTTCCTTCTTTTTT
TTTTTCTCCTTTTTCTTCCTCCTTTTTTTTCCTTCTTTTTTTTTTCCTTT
TTCTTTTCCCCCCTTTTTTCTCCTCCTTCTTCTTCTTCCCCCCTCTTTTT
CACTTCTTTTTTTCCCTTTTTCCTTCCTTTTTCCCCTCTTTCCTCTTTTT
TCCCTTTTTTTCCCCCTTTTCATTCCCCCCCTTTTCTCACCTTTTCTTTC
TTACCCCTTTTTTTCCACTCTCCCCTTTCCTTCCCTCCTCTCTCCTTTTT
TCCTTTCCTCTCCTTCTCCCCCTTCTTTTTCTTTTTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_m15.b1 MSMg01no128_m15.b1 CHROMAT_FILE:
MSMg01no128_m15.b1 PHD_FILE: MSMg01no128_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:00 2005
         (555 letters)



>mm_chr5_133402707_133403661
          Length = 955

 Score = 1033 bits (534), Expect = 0.0
 Identities = 546/550 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctccttcctccctccctccctccttccctccctcctttcctctctctctcctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattctctccttcctccctccctccctccttccctccctcctttcctctctctctcctc 753

                                                                       
Query: 65  tttccattacatggcacagaggaggccacacttacccaagccaagcaaccataatttcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tttccattacatggcacagaggaggccacacttacccaagccaagcaaccataatttcca 693

                                                                       
Query: 125 cactagtggatcaagacaagagaccctgttatagctgctcctgcacagaagcagggatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cactagtggatcaagacaagagaccctgttatagctgctcctgcacagaagcagggatcc 633

                                                                       
Query: 185 accacggttacttctgctttgtacaaaagcagagagccagtccccactgcagaagggaaa 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 accacggttacttctgcttcgtacaaaagcagagagccagtccccactgcagaagggaaa 573

                                                                       
Query: 245 cacagatacttgtaggctcataggaagagggatggagagagctaaccaggtggcacaccc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 572 cacagatacttgtaggctcataggaagagggatggagagagctaaccaggtggcgcaccc 513

                                                                       
Query: 305 taaatctaaaataacctcacatgcccttagagactacagcgcttacttccaaacgtctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 taaatctaaaataacctcacatgcccttagagactacagcgcttacttccaaacgtctgt 453

                                                                       
Query: 365 cttcgtgcacttgaagcgtctataatagttgcaaataaactttggttttgttctgctctg 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cttcgtgtacttgaagcgtctataatagttgcaaataaactttggttttgttctgctctg 393

                                                                       
Query: 425 agcgcttgccctatttttaaattctttaaacgacagagaaaaagaagccatcaaacttca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agcgcttgccctatttttaaattctttaaacgacagagaaaaagaagccatcaaacttca 333

                                                                       
Query: 485 caagcatcatccttgctgtgatttacaaaggatgttacaggctgagagaaaggaagctga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caagcatcatccttgctgtgatttacaaaggatgttacaggctgagagaaaggaagctga 273

                     
Query: 545 tgagcatcac 554
            |||||||||
Sbjct: 272 ggagcatcac 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)