Query= MSMg01no128_o04.b1 MSMg01no128_o04.b1 CHROMAT_FILE:
MSMg01no128_o04.b1 PHD_FILE: MSMg01no128_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:07 2005
(447 letters)
>mm_chr5_33916613_33917460
Length = 848
Score = 797 bits (412), Expect = 0.0
Identities = 436/444 (98%), Gaps = 1/444 (0%)
Strand = Plus / Minus
Query: 5 gaattctttctattgccga-agatctagacagattactaggatagttcttggacctcatt 63
|||||||||||| || || |||||||||||||||||||||||||||| |||||||||||
Sbjct: 648 gaattctttctagggctgagagatctagacagattactaggatagttcatggacctcatt 589
Query: 64 ctgtaaccacagatgaggccccagggatgtgcccaaggtggggtgaccctacattcaggg 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ccgtaaccacagatgaggccccagggatgtgcccaaggtggggtgaccctacattcaggg 529
Query: 124 aagccatatgctcaagcttctttccctacagttgggagaagcgaggctattctcctgcac 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 528 aagccatatgctcaagcttctttccctacagttgggagaagcgaggctattctcctgcgc 469
Query: 184 cccatgaagtgataaggaaaaagccacaggctcctcctacacaggcttggctgaggccac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cccatgaagtgataaggaaaaagccacaggctcctcctacacaggcttggctgaggccac 409
Query: 244 ttcctcctcagtaccctgaagcagggtagcgtcttgtctctgagccttgggagcctgaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttcctcctcagtaccctgaagcagggtagcgtcttgtctctgagccttgggagcctgaag 349
Query: 304 ggagggtatctggtctgcacctccctgatgctgctccagggcaaaggaggtgggagggca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggagggtatctggtctgcacctccctgatgctgctccagggcaaaggaggtgggagggca 289
Query: 364 tgtggaacctgtgctagaggtagtggtgatgggccaaataggccatagtgttgggctgcc 423
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 288 tgtggaacctgtgctagaggtagtgatgatgggccaaataggccatagtgttgggctgcc 229
Query: 424 cgttcaattagcactggcatgggc 447
||||||||||||||||||||||||
Sbjct: 228 cgttcaattagcactggcatgggc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 848
Length adjustment: 10
Effective length of query: 437
Effective length of database: 838
Effective search space: 366206
Effective search space used: 366206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_o04.g1 MSMg01no128_o04.g1 CHROMAT_FILE:
MSMg01no128_o04.g1 PHD_FILE: MSMg01no128_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:07 2005
(184 letters)
>mm_chr5_33750010_33750593
Length = 584
Score = 325 bits (168), Expect = 1e-93
Identities = 183/194 (94%), Gaps = 10/194 (5%)
Strand = Plus / Plus
Query: 1 cagaaacaggcaccccagccagcacctgtgtgtctgcctttcacatcactgcactgtgca 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cagaaacaggcaccccagccagcacctgtgtgtctgcctttcacatcaccgcactgtgca 260
Query: 61 gtttcgctcatgtgcactcccactgcttcctctgcccttcaggcacccagcaagcaacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcgctcatgtgcactcccactgcttcctctgcccttcaggcacccagcaagcaacct 320
Query: 121 ctccagcatttcctggcctcacctctagttttttttttttttttt----------atgtg 170
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ctccagcatttcctggcctcacctctagtttttttttttttttttttttttttttatgtg 380
Query: 171 atgggtgttttgca 184
||||||||||||||
Sbjct: 381 atgggtgttttgca 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space: 101376
Effective search space used: 101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
