BAC Information

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BAC

Clone NameMSMg01-129F03
Chromosome5 (Build37)
Map Location 59,128,623 - 59,129,012
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129F03.T7 (MSMg01no129_f03.b1)MSMg01-129F03.TJ (MSMg01no129_f03.g1)
ACCAG337360AG337361
length699706
length of high quality
(start - end)
386 (63 - 448)197 (120 - 316)
definitionCHROMAT_FILE: MSMg01no129_f03.b1 PHD_FILE: MSMg01no129_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:41 2005CHROMAT_FILE: MSMg01no129_f03.g1 PHD_FILE: MSMg01no129_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTAAACGACTCCTATTCGGAGAGGATCCGCGGAATTCCAC
AATGTCCCTTGATCTGAGACAATTATAAATATATTTGTGTTCATACTCTA
AGAGTATGTGTGTGCCATATTTACATATGCATGCCTCAATCTGTGCCCTA
TTCAAACACCAGGGTAGAATTTGCATCTACCTTCTTTGCTCAATTAGAGC
CTTTTTAAGAAGCTAAGCAAAGTTTTTTTTTAAATTAAAAATAGCACCCC
GTGAAACACTTGAATCTAAAATAGAATATGTGTGAAACTCAGACACTAAA
ATAGAATTTCTACCACCCCACAAATCCAAATGCTTTAATCAGTTCACTCT
CTTTCTCTCTCTCTCTCTTTCTGCGTGTGTGTGCTTTAATGTGTAACATA
ATCATGTCTGTCTGACTTACTTAATGTCACCCTTTCAGGATTGTTTGTGG
ATTCGATGAATATAATAAAATAAACACGTGTGAGAAACCCGGCTTTATTT
TTTCATATGTAAAAGCTCACTATTTGATTCCATTGTCTCTGGATTGCACC
CTAAAACTGCAGCTTCACAGATGAACTTTGGCATGAGAGCCTGTGCTACC
CTGTGCGGTAGAGACTAACTATACCCTTAGCAGCTTTCGTCTAACTTAGC
TAAAATTCTCACCAATATAAAACTTTCCTTTAAACGGAAGGGCCCGGAT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATTTGGGCCTATCACTGTAACTCCTTTCCC
TCAGACTCTTCTTACCCTTATTCAAGGCTCTTTCCCACTTTTTCTTCTAT
TAGATTCAGTGTAAATGGTTTCATGTTGAGTTCCTTGATCCATTTGCTCT
TGAGCTTTGTACAAGGTGCCAAAAATGGATCTACTGTCATTTTTGTACAG
ACTGTCAATTAGAACAGCACAATTTATTGAAGATGCTTTCTTTTTTCCAT
TGTATATTTTTGGCTTCTTGTTCAAAGATCAATTGTCCTTAAGTGTTTGG
TTTTATTTCTTGCGTCTTCAATTCTATTCCATTTATCAACATGTCCTTCT
CTGTATCACCACCATGTATACTTAATCACCATCACTCCGCACTGTACCTT
GAGGTCACGAGCGTTGATTCTTGCATAACCTCTATTGTTGTTAACAATAA
TACCAGTCTTCGCTATTCCGGTTTGTTTTGTCCCGCCTTGCCTTGTTTTG
CATTGTCTTGCCTCGTTCTAGCTTTGTTATGTTTTAATGTGAACATGATG
TGTTCTTTCACCTTCTTTTATGTTTTTACCTAATCAATTTCTTTTAGTTT
CTATACTTTTCCTTCTATGATTTTGACAATTTACTCCATATTCCTGAAAA
TCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_f03.b1 MSMg01no129_f03.b1 CHROMAT_FILE:
MSMg01no129_f03.b1 PHD_FILE: MSMg01no129_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:41 2005
         (386 letters)



>mm_chr5_59128423_59129209
          Length = 787

 Score =  692 bits (358), Expect = 0.0
 Identities = 381/390 (97%), Gaps = 4/390 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagac-aattataaatatatttgtgttcatactctaagagtatgtgtgtgccatatt 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tctgagacaaattataaatatatttgtgttcatactctaagagtatgtgtgtgtcatatt 260

                                                                       
Query: 60  tacatatgcatgcctcaatctgtgccctattcaaacaccagggtagaatttgcatctacc 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatatgcatgcctcaatctgtgtcctattcaaacaccagggtagaatttgcatctacc 320

                                                                       
Query: 120 ttctttgctcaattagagcctttttaagaagctaagcaaag---tttttttttaaattaa 176
           |||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||
Sbjct: 321 ttctttgctcaattagagcctttttaagaagctaagcaaagtttttttttttttaattaa 380

                                                                       
Query: 177 aaatagcaccccgtgaaacacttgaatctaaaatagaatatgtgtgaaactcagacacta 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatagcaccccgtgaaacacttgaatctaaaatagaatatgtgtgaaactcagacacta 440

                                                                       
Query: 237 aaatagaatttctaccaccccacaaatccaaatgctttaatcagttcactctctttctct 296
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 aaatagaatttctaccaccccacaaatccaaatgctttaatcagctcactctctttctct 500

                                                                       
Query: 297 ctctctctctttctgcgtgtgtgtgctttaatgtgtaacataatcatgtctgtctgactt 356
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctctctctttctgtgtgtgtgtgctttaatgtgtaacataatcatgtctgtctgactt 560

                                         
Query: 357 acttaatgtcaccctttcaggattgtttgt 386
           ||||||||||||||||||||||||||||||
Sbjct: 561 acttaatgtcaccctttcaggattgtttgt 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 787
Length adjustment: 9
Effective length of query: 377
Effective length of database: 778
Effective search space:   293306
Effective search space used:   293306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)