Query= MSMg01no129_j14.b1 MSMg01no129_j14.b1 CHROMAT_FILE:
MSMg01no129_j14.b1 PHD_FILE: MSMg01no129_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:04 2005
(632 letters)
>mm_chr5_9837745_9838776
Length = 1032
Score = 1189 bits (615), Expect = 0.0
Identities = 624/627 (99%)
Strand = Plus / Plus
Query: 6 aatcacagtaatgctatcacaaatcaagaaatgttctctagtacatcatttgctgagaga 65
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 206 aatcacagtaatgctattacaaatcaagaaatgctctctagtacatcatttgctgagaga 265
Query: 66 attttgtgtaatttatacctccaaagtgtaataaaattctccatggaagcttgaatgtat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 attttgtgtaatttatacctccaaagtgtaataaaattctccatggaagcttgaatgtat 325
Query: 126 tgttttagctgcacttagcagatgttgtactatggtgattttattaaaattattaattat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgttttagctgcacttagcagatgttgtactatggtgattttattaaaattattaattat 385
Query: 186 aaaatttatgatttttattctgatactttcacaatgcatataatgtatattgatcatatg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaatttatgatttttattctgatactttcacaatgcatataatgtatattgatcatatg 445
Query: 246 tatgctgttatcatcattcattcccaccctcctatttattagtattcctgttttttaaag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tatgctgttatcatcattcattcccaccctcctatttattagtattcctgttttttaaag 505
Query: 306 actgaatagtattattatttacaatcttattactttgtttctgaaaatgtgaagatacat 365
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 506 actgaatagtattattatttacaatattattactttgtttctgaaaatgtgaagatacat 565
Query: 366 atgtatatatacatatgttagcactatctaattcaattttttatactaaataaaatgtaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atgtatatatacatatgttagcactatctaattcaattttttatactaaataaaatgtaa 625
Query: 426 aattcatgagaattagtttagtttccctaatcatgtattgtgatgactgttccatgtata 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aattcatgagaattagtttagtttccctaatcatgtattgtgatgactgttccatgtata 685
Query: 486 tatccatttttactactgcttatttcacattaattgggaaatggaagcagtccagttgtc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tatccatttttactactgcttatttcacattaattgggaaatggaagcagtccagttgtc 745
Query: 546 catcagaagatgaatgagtaacaaaatgtgatgaatgcagtagtttatattcatccagga 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 catcagaagatgaatgagtaacaaaatgtgatgaatgcagtagtttatattcatccagga 805
Query: 606 agaaatgtgaaatcatgataattgcag 632
|||||||||||||||||||||||||||
Sbjct: 806 agaaatgtgaaatcatgataattgcag 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_j14.g1 MSMg01no129_j14.g1 CHROMAT_FILE:
MSMg01no129_j14.g1 PHD_FILE: MSMg01no129_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:04 2005
(644 letters)
>mm_chr5_9869319_9870363
Length = 1045
Score = 1191 bits (616), Expect = 0.0
Identities = 636/643 (98%), Gaps = 1/643 (0%)
Strand = Plus / Minus
Query: 3 aggcatggaaggaagttcattaaccattacatatttgtagttaatgttgccaaataaatt 62
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1007 aggcatggaaggaagttcattaaccattacatatttgtagttaatgttggaaaataaatt 948
Query: 63 ctaatgctctaaggaataataagaatattatagctaaggaaagttactgcatattgaaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 ctaatgctctaaggaataataagaatattatagctaaggaaagttactgcatattgaaaa 888
Query: 123 taggtataaaatatttttaaataaatatttaaaatattttaagacaaagaactagtttca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 taggtataaaatatttttaaataaatatttaaaatattttaagacaaagaactagtttca 828
Query: 183 gaggtgatagatctgcaatatacactgaattatgtcattagacacaaaaatatgtactga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaggtgatagatctgcaatatacactgaattatgtcattagacacaaaaatatgtactga 768
Query: 243 aataacattgtgtacctcatgaatgtgtacagttgcattgcatcagttaaaaactctaat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aataacattgtgtacctcatgaatgtgtacagttgcattgcatcagttaaaaactctaat 708
Query: 303 attcttgattat-aaaaaaatgttttagaagagtaactctttacaagaaaacaaacaaag 361
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 attcttgattataaaaaaaatgttttagaagagtaactctttacaagaaaacaaacaaag 648
Query: 362 aaaaagagaaaaactaactccaagaagttcaagtattaagaatagagtaactagagatac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaaaagagaaaaactaactccaagaagttcaagtattaagaatagagtaactagagatac 588
Query: 422 taggaaataactcgctaatatgttctactcaaaaccttggacgagcatttctgtaaggaa 481
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 587 taggaaataactcgctaatatgttctactcaaaatcttggacgagcatttctgtaaggaa 528
Query: 482 agtgattgatctgtattctgattaattgttgagaaatggacaaaaaaatttgtaaaatac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agtgattgatctgtattctgattaattgttgagaaatggacaaaaaaatttgtaaaatac 468
Query: 542 gtagattaggatcatttctgtaatgtctaatatttgacataatctgagaagagataagct 601
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtagaataggatcatttctgtaatgtctaatatttgacataatctgagaagagataagct 408
Query: 602 ctatggcatagaanaagaatgtcaggagaagtgttggcaagaa 644
||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 407 ctatggcatagaaaaagaatgtcaggagaagtattggcaagaa 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space: 656190
Effective search space used: 656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
