Query= MSMg01no129_j22.b1 MSMg01no129_j22.b1 CHROMAT_FILE:
MSMg01no129_j22.b1 PHD_FILE: MSMg01no129_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:06 2005
(468 letters)
>mm_chr5_73348590_73349457
Length = 868
Score = 890 bits (460), Expect = 0.0
Identities = 466/468 (99%)
Strand = Plus / Plus
Query: 1 gtagagcgtccccacagcctatgattagccgcttgcagcagcctcgcctttccctccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagagcgtccccacagcctatgattagccgcttgcagcagcctcgcctttccctccaag 260
Query: 61 gccatcccacagatttacagacgagcaatgttaaaaatgaaggtaaaacagcagagcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatcccacagatttacagacgagcaatgttaaaaatgaaggtaaaacagcagagcttg 320
Query: 121 ggaaagaggtgtccatattttattgtaaaaagaatacattttccccggatggttttattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaagaggtgtccatattttattgtaaaaagaatacattttccccggatggttttattt 380
Query: 181 caaacaggtagttatggtcactgtttcattaatgtaaacatgagaagaaagtaaatttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacaggtagttatggtcactgtttcattaatgtaaacatgagaagaaagtaaatttaa 440
Query: 241 ctttatgaaactagttatctctcagctactgatgtgattctcaagcccaaatgcgccgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ctttatgaaactagttatctctcagctactgatgtgattctcaagcccaaatgcggggct 500
Query: 301 aagtggacatgggaatttttaagagtttgcgttattttattcatggaatggcctttattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtggacatgggaatttttaagagtttgcgttattttattcatggaatggcctttattt 560
Query: 361 gtttaggtttgattatgtaacttacagtttctttaagggtgctttatttcatccatttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttaggtttgattatgtaacttacagtttctttaagggtgctttatttcatccatttat 620
Query: 421 aacctctgggtttgctttttttatataattttctgttacttctacagt 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacctctgggtttgctttttttatataattttctgttacttctacagt 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_j22.g1 MSMg01no129_j22.g1 CHROMAT_FILE:
MSMg01no129_j22.g1 PHD_FILE: MSMg01no129_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:06 2005
(568 letters)
>mm_chr5_73446657_73447624
Length = 968
Score = 669 bits (346), Expect = 0.0
Identities = 381/394 (96%), Gaps = 5/394 (1%)
Strand = Plus / Minus
Query: 176 gatggctccccagttaagagcacatgttgcttgttcttaggaccccagtttgattcccag 235
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 968 gatggatccccagttaagagcacatgttgcttgttcttaggaccccagtttgagtcc--- 912
Query: 236 cacctacatggcagctcactgctgtctataactccagttccagggg-acctaacaccctc 294
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct: 911 cacctacatggcagctcaccgctgtctataactccagttcc-ggggaacctaacaccctc 853
Query: 295 ttttggtttctatagatgctctaccaatgtgatgtagagacatgtgcaggcaaagcctcc 354
||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ttttggtttctgtggatgctccaccaatgtgatgtagagacatgtgcaggcaaagcctcc 793
Query: 355 atacacatgagataaaataataaaaactttttttaaaagtcagaatgtgttttagtattt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 atacacatgagataaaataataaaaactttttttaaaagtcagaatgtgttttagtattt 733
Query: 415 aataatacatctaaaacaagtatattttaaaaccttttatcatctatttaatattcaacc 474
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 732 aataatacatctaaaacaagtatatttaaaaaccttttatcatctatttaatattcaacc 673
Query: 475 ttgaagcgaaaacgtcacctcaaaagtccaaatgtatgggattccttgtctttaacagcc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttgaagcgaaaacgtcacctcaaaagtccaaatgtatgggattccttgtctttaacagcc 613
Query: 535 aggtctctgcacaagactttgccaattaatgatt 568
||| ||||||||||||||||||||||||||||||
Sbjct: 612 aggactctgcacaagactttgccaattaatgatt 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
