Query= MSMg01no129_l16.b1 MSMg01no129_l16.b1 CHROMAT_FILE:
MSMg01no129_l16.b1 PHD_FILE: MSMg01no129_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:15 2005
(376 letters)
>mm_chr5_53171060_53171835
Length = 776
Score = 609 bits (315), Expect = e-179
Identities = 362/379 (95%), Gaps = 4/379 (1%)
Strand = Plus / Plus
Query: 1 ctcaggaattctcaagggctcagaagtagcagttctgcggtatgtagttctgcagtgttc 60
|||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 199 ctcaggaagtctcaagagctcagaagtagcagttctggggtatgtagttctgcagtgttc 258
Query: 61 tcgctgttttt---tttttttaattatttttttaagacttatttattttatatatatgag 117
|| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 259 tcactgtttttctttttttttaattatttttt-aagacttatttattttatatatatgag 317
Query: 118 tacacagtagcttgtctttcagacacaccagaagagggcactggatcccgttacagatgg 177
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 318 tacacagtagcttgtctttcagacacaccagaagagggcattggatcccattacagatgg 377
Query: 178 ttgtgagccaccatgtggtttctgggaattgaactcaggacctctggaagaacagtcagt 237
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttgtgagccagcatgtggttgctgggaattgaactcaggacctctggaagaacagtcagt 437
Query: 238 gttcttaccagctgagccatctcgccagccccctcactgttttttagagaacccacaaat 297
| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 438 gctcttaccagctgagccatctccccagccccctcactgttttttagagatcccagaaat 497
Query: 298 ctcccatggacctttgggtctcaggccttcccagataagcatcacagtttggggctattc 357
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctcccatggtcctttgggtctcaggccttcccagataagcatcacagtttggggctattc 557
Query: 358 acagctggggaggaaagca 376
|||||||||||||||||||
Sbjct: 558 acagctggggaggaaagca 576
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_l16.g1 MSMg01no129_l16.g1 CHROMAT_FILE:
MSMg01no129_l16.g1 PHD_FILE: MSMg01no129_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:15 2005
(292 letters)
>mm_chr5_53277681_53278369
Length = 689
Score = 513 bits (265), Expect = e-150
Identities = 283/291 (97%), Gaps = 5/291 (1%)
Strand = Plus / Minus
Query: 1 aaagacaggaaaattctgcggcgcaacaggtagcaaaagagaaacctcacgcactgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 487 aaagacaggaaaattctgcggcgcaacaggtagcaaaagagaaacctcaagcactgaag- 429
Query: 61 catacccagaggctggagaaaggc-tttattgagggaggagaaagcacaggtgacgactg 119
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 428 ---acccagaggctggagaaaggcatttattgaggggggagaaagcacaggtgacgactg 372
Query: 120 agaaaaagaccctctgagaagccaacggagcgggggtggtggaggcgccagggggacgac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agaaaaagaccctctgagaagccaacggagcgggggtggtggaggcgccagggggacgac 312
Query: 180 tcgaaaatccagaagcccagtctcgtcctgagggctggggttttaaaagctccggagaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcgaaaatccagaagcccagtctcgtcctgagggctggggttttaaaagctccggagaat 252
Query: 240 tttcccctcccaccttacagttggtcaatttgaaggcagacaagatggttg 290
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 251 tttcccctcccaccttacagttggtcaatttgaagacagacaagatggttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 689
Length adjustment: 9
Effective length of query: 283
Effective length of database: 680
Effective search space: 192440
Effective search space used: 192440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
