BAC Information

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BAC

Clone NameMSMg01-130F12
Chromosome5 (Build37)
Map Location 63,635,754 - 63,636,217
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130F12.T7 (MSMg01no130_f12.b1)MSMg01-130F12.TJ (MSMg01no130_f12.g1)
ACCAG338121AG338122
length779718
length of high quality
(start - end)
230 (64 - 293)495 (73 - 567)
definitionCHROMAT_FILE: MSMg01no130_f12.b1 PHD_FILE: MSMg01no130_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:05 2005CHROMAT_FILE: MSMg01no130_f12.g1 PHD_FILE: MSMg01no130_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAATAGTTTCATCTCAAATGCCAAGAAGTACTTAAAGACATGTTCGAAG
TCCTTAGTCTTCAGGGAAATGCAAATCAAAACAACTCTGAAATTCCATCT
TACACCTGTCAGAATGGCTAACATCAAAAGCTCAAGTGGTAGCACATGCT
AGCGAGGATGTGGAACAAGGGAAACACTCTCCCATTGCTGTTGGGATTGA
AAACATGTACAGCCTCTCTGAAAATAATTTGGAGCTTTCTCAAAAAACTT
GGAATAGTTCTACCTATAGATCCAAAAAATGTTCCACCATCCCAAAAAGA
CACTTGTTCAACTATGCTCATTGCACCCTTTATTCTTTCTCTGACTTTTA
TTTTGAAAAATTTTTCATTTTGTCCAACCTAATTGATTGTTTCCACAAAA
ATTTTCTTCCTCCCAATAATTTAAATAGGCTTTTCGCCTGCCGTTTGCTG
GTGCTTTGTTTCCCCCCCCTTACCCCCACCTTTATCTCCATCTTCTTCTC
CCCCCCCTTCCCCCACTCTTCCCTTTTTNCTTTCCCCTCCCCCCTCTTCT
TCCCCCTACCCTTCTCTTTCTCCTCCTTCTCTCTTTCTCTTTCTTTTCCC
TTTGATATGTCGGGGTGTTCCTAANNTTGGGGATCNTTTTCTTNNNNCCC
CTTCCCCCCCCTCTTTTTTCCCTCCTTCCATAAGAGTTTATTGTGTTCAC
TNTTTTNNCCNTATTCCNNTTNCCNCTAT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGTTTAAAAATCTGTGAGAAAAATCA
GGTTTTCTGGGCTGATTCCTCTTTTATCAGATCTTTGGATACTGTTTTCC
CATGAGCCAGATACTTTTCTGTATTCTGTAACTCTCTCCCCTTGTTCATA
TCTTTGTCTGAAATATTTTCAGAAGTATTCTAGAAAAGATTAATATTTAA
AGGATAAAGTTTATGTATGTCTGAATATGTACTTAAACATTTCCATCATT
AAATTTATTAACTTTGCTTATATACACACAATTTTAGGTTCACTCATTCA
CCTCCAACTATGGACATTCTAGTTATTATGTTGAACATCAATATTCAAGA
GAACTCACACCATTCCCGCTCCTCAAAGGTTACACTTGAAGAGAATTCCC
AGGAACACTACCAAAACTATGACATGGTAATATTACCAGAAACATGGATT
TATGTAGTGTATTAATACATTAAATCACTTGCGGAGAAATTGACAACCTG
GTTTCTATCCCTACATCCCACAATATGGGCAGAGAGATTAAGCTCCCTCC
AATTGTCATTTGATGCCCACCTGTGACCACTAATGTGTGTACATGTGTGC
ACACATACTCACATATATGACTGAACGAATGACACTACATTTCCTCTACA
AATTATAAAACTTGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_f12.g1 MSMg01no130_f12.g1 CHROMAT_FILE:
MSMg01no130_f12.g1 PHD_FILE: MSMg01no130_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:05 2005
         (495 letters)



>mm_chr5_63635524_63636419
          Length = 896

 Score =  752 bits (389), Expect = 0.0
 Identities = 446/465 (95%), Gaps = 3/465 (0%)
 Strand = Plus / Minus

                                                                       
Query: 31  ttttctgggctgattcctcttttatcagatctttggatactgttttcccatgagccagat 90
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttttctggcctgattcctcttttatcagatctttggatactgttttcccatgagccagat 635

                                                                       
Query: 91  acttttctgtattctgtaactctctccccttgttcatatctttgtctgaaatattttcag 150
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 acttttctgtattctgtgactctctccccttgttcatatctttgtctgaaatattttcag 575

                                                                       
Query: 151 aagtattctagaaaagattaatatttaaaggataaagtttatgtatgtctgaatatgtac 210
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 574 aagtattctagaaaagattactatttaaaggataaagtttatgtatgtctgaatatgtat 515

                                                                       
Query: 211 ttaaacatttccatcattaaatttattaactttgcttatatacacacaattttaggttca 270
           ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 514 ttaaacatttccaccattaaatttattaactttgcctataaacacacaattttaggttca 455

                                                                       
Query: 271 ctcattcacctccaactatggacattctagttattatgttgaacatcaatattcaagaga 330
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctcattcacctccaactatagacattctagttattatgttgaacatcaatattcaagaga 395

                                                                       
Query: 331 actcacaccattcccgctcctcaaaggttacacttgaagagaattcccaggaacactacc 390
           ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 394 actcacaacattcctgctcctcaaaggttacacttgaagagagttcccaggaacactaac 335

                                                                       
Query: 391 aaaact-atgaca-tggtaatattaccagaaacatggatttatgtagtgtattaatacat 448
           |||| | |||| | ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 334 aaaaattatga-agtggaaatattaccagaaacatggatttatgtagtggattaatacat 276

                                                        
Query: 449 taaatcacttgcggagaaattgacaacctggtttctatccctaca 493
           |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 275 taaatcacttgctgagaaattgacaacctggtttctatccctaca 231


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space:   429710
Effective search space used:   429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)