CCGATTCTTNNNNNGGGCAGTGGGCGCTATCGACTCCTATGGGAGAGGAT
CCGCGGAATTCATGGATGCAATATCCCATTTAATTTTTGGNCTAGGNCTC
ACGCAATGTGGCTTACCCTAAAAAAGGCAGGAAGGCCCCACAGGCCNCCA
CAGCACAGCACCCGGAAGGNAGCAGCAGCACCNAAGGCCCCCCAGNAGAG
CNACCCGACAGGCCANCNGGGAAAAGAAGCAGGGCNAGGNGGCGGAGGGA
CGGAANAGGNAAGGNCNCCGNANCAANNCAGAAGGAAGAGAAAACCCCAC
GAAAGAAGAGAGANACCNCAGGGGACGGCNACAGNCAGNAACCAAGGGAC
ACCGAGGGGCANNCCNGGNGNANAGGGNAGAACGGNNCCAGAAACGGCCC
CAGCTTTTTTTCACAGCTGNGATATAGTATCAGAGTCTCACTGTAAGTAT
GATTTTTTTTTTCCCCCCCCCCTTTATAAAATATAGCTGAAGAAAAAAAA
GAGTGAGTGAAGTCACTCAGGAGATGTCTGGAAAACACCACCAGTGTGCT
CAGACACAGTCAACAAGGTAGGAAGGTCTGCATGAAGCATACAGTGTTAA
GACAGAACTTGATAACAACACAGAGAATTTTGCTCATTCTTTCTCTTCCT
ATCCCCTAGCCTAAGCCACTGCAATCTTTCACCTGGACCACAGGATACAC
TGCATAGTGGTACCCTTGTTAACCTATACAAACTCACCTCCTTTCTCCAG
GACACTCATGAGAGTTTTGCAAATTTAAATCACATCTTGTATCACTCTTG
CATGATCCTTCCATCACTTCACAATACAATTAGGGGAAAAAAATCCTACT
TCTGTGCAATGATGTCCCAGGCCCCGAGTTGTCCTACTATGCACTACAGA
GGCCCCGAAGCTTTATATCCCAGGGTAGACCCAGTTTCCCACACTCTATG
TTCCCCCCCCAAGAAATTGTTTGAGATGGTCTCTGGTTGCCCCCCCCTCC
CTAGTTGGATGCTCACCCTCTTTTATCTTTCCTAAGGGGGGTCCCACCCC
GTTCCCCACCCCTGTCCTTTTACGGAATTCTTTCGGGGTGTTAATGGACT
TTATAAATTTCCTTTAATCCCCCCGAAATATTAAAAAGTTTTGAAATTAA
CAACTTTCTGTGGTCTTTTAAATTGAGAGGGGGTATTAATTTTTCAATTT
TGTGATTGAAGTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCGAGAAATTCTTTCTGCTTTGAGCTGAAACCAAATATA
GACATTCAGACTCAAAGCTAAGGATTGCATTTGTAGATGTTCTTAAACTC
AGGTTCTAACTTTCCACTAACAGAAGCAAGGGTTGGCCTTTGTGAGTCAT
GAGTGTCTAAGGCTCTAATTATTTACTTTTCGTGGTGAAGAAGAGCAGAG
GACAAGTCAGGGGTGGTCTTCTGATGCTAAGGGTCAAAGGATTAACCGGA
AGACAAGGGTTTGATAGATTTGATTATGTCAAAACGAATACTTCTGTTCA
GCTAAGAACATTAAGGCCAATTTTAAAAAGAGAGATAAAAAGGAGGCATA
TAAACATAAAAGTTTGAAATTGCACACCTTTAATCCCAGCACTTAGAAGG
CAGAGACAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGACTGA
GTTCCAGGATATCCAGGGTTACACAGAGGAACCCTGTCTCAAAAAAACAA
AAAAACAAACAAACGAAAAAGGATTTATTTTTAAAAATTTAAAATTAAAG
TCATACATACAAAAGAAATCTAAAACCATTTGAAATCCCATTTAAAATAT
GTTTCTGGGGTTTAGAAGTTATTAAACAACCATAGACAGAAGATATAGGA
ATTGGTA

Query= MSMg01no130_l05.b1 MSMg01no130_l05.b1 CHROMAT_FILE:
MSMg01no130_l05.b1 PHD_FILE: MSMg01no130_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:37 2005
         (189 letters)



>mm_chr5_97015059_97015647
          Length = 589

 Score =  342 bits (177), Expect = 6e-99
 Identities = 186/189 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcactcaggagatgtctggaaaacaccaccagtgtgctcagacacagtcaacaaggtag 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 gtcactcaggagatgtctggaaaacacaaccagtgtgctcagacacagtcaacaaggtag 260

                                                                       
Query: 61  gaaggtctgcatgaagcatacagtgttaagacagaacttgataacaacacagagaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggtctgcatgaagcatacagtgttaagacagaacttgataacaacacagagaatttt 320

                                                                       
Query: 121 gctcattctttctcttcctatcccctagcctaagccactgcaatctttcacctggaccac 180
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gctcattctctctcttcctatcccctagcctaagccactgcaatctttcaactggaccac 380

                    
Query: 181 aggatacac 189
           |||||||||
Sbjct: 381 aggatacac 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no130_l05.g1 MSMg01no130_l05.g1 CHROMAT_FILE:
MSMg01no130_l05.g1 PHD_FILE: MSMg01no130_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:37 2005
         (638 letters)



>mm_chr5_97180234_97181271
          Length = 1038

 Score = 1021 bits (528), Expect = 0.0
 Identities = 546/552 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttctgctttgagctgaaaccaaatatagacattcagactcaaagctaaggattgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttctttctgctttgagctgaaaccaaatatagacattcagactcaaagctaaggattgca 493

                                                                       
Query: 61  tttgtagatgttcttaaactcaggttctaactttccactaacagaagcaagggttggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tttgtagatgttcttaaactcaggttctaactttccactaacagaagcaagggttggcct 433

                                                                       
Query: 121 ttgtgagtcatgagtgtctaaggctctaattatttacttttcgtggtgaagaagagcaga 180
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 432 ttgtgagtcatgaatgtctaaggctctaattatttacttttcgtggtaaagaagagcaga 373

                                                                       
Query: 181 ggacaagtcaggggtggtcttctgatgctaagggtcaaaggattaaccggaagacaaggg 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 372 ggacaagtcaggggtggtcttctgatgctaagggtcaaaggattaaccagaagacaaggg 313

                                                                       
Query: 241 tttgatagatttgattatgtcaaaacgaatacttctgttcagctaagaacattaaggcca 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 312 tttgatagatttgattatgtcaaaaggaatacttctgttcagctaagaacattaaggcca 253

                                                                       
Query: 301 attttaaaaagagagataaaaaggaggcatataaacataaaagtttgaaattgcacacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 attttaaaaagagagataaaaaggaggcatataaacataaaagtttgaaattgcacacct 193

                                                                       
Query: 361 ttaatcccagcacttagaaggcagagacaggcagatttctgagttcgaggccagcctggt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 192 ttaatcccagcacttagaaggcagagacaggcagatttctgagttcgaggccagcctgat 133

                                                                       
Query: 421 ctacagactgagttccaggatatccagggttacacagaggaaccctgtctcaaaaaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ctacagactgagttccaggatatccagggttacacagaggaaccctgtctcaaaaaaaca 73

                                                                       
Query: 481 aaaaaacaaacaaacgaaaaaggatttatttttaaaaatttaaaattaaagtcatacata 540
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  aaaaaacaaacaaacaaaaaaggatttatttttaaaaatttaaaattaaagtcatacata 13

                       
Query: 541 caaaagaaatct 552
           ||||||||||||
Sbjct: 12  caaaagaaatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)