BAC Information

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BAC

Clone NameMSMg01-130M23
Chromosome5 (Build37)
Map Location 143,673,077 - 143,841,871
singlet/doubletdoublet
Overlap geneFscn1, 2810055G22Rik, LOC667809
Upstream geneSdk1, LOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb
Downstream geneOlfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130M23.T7 (MSMg01no130_m23.b1)MSMg01-130M23.TJ (MSMg01no130_m23.g1)
ACCAG338470AG338471
length713707
length of high quality
(start - end)
194 (130 - 323)182 (131 - 312)
definitionCHROMAT_FILE: MSMg01no130_m23.b1 PHD_FILE: MSMg01no130_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:47 2005CHROMAT_FILE: MSMg01no130_m23.g1 PHD_FILE: MSMg01no130_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,673,077 - 143,673,270)(143,841,691 - 143,841,871)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAACCGGCGG
AATTCTGAGTGTGTTACCAAAAAACGGTGTACATGTGATAGCTTGAAGAG
TCAGGTCTCTTCACCTTGTGGGTCACCCGGGATCATCAGGCTTGGTGGTA
AGCTTCTTTACCCACTGAGACATCTCACTGGCCCATGTTTGCTCATTGGT
TTTTCTTTACGGCAAGTTCTCATACAGTAGCCCAGCCTGGCCTCAAATCC
AAGGCCAAGCACTTAGATTAGAAGCACGCTCCATTGAAATGGGGGAACTT
ATTAAAGTTCTTGGGAGAGTTTTGTTATCTTTTTTAAAAACTACCTTCTG
TCTTGGCCCCCTAGGGCACCAGCAAAAACTGCCCCACCCTTCTGGGGAGT
TCCCAGACTTTCAAATTCACACCGATTTATTCAGAAACAGAAGAGAAACT
TCCAGGTCTTCCCCTTCATACGCACTAGTAAAGGCCTTTCTGCTTGCCCT
AGGGCAAGCAGGATTCCTGTTCCTTGCTTCCAGATGGGAATGCTACCCAA
TGCTCAGTGGGAAGGCAGTGAGGAATGGAGGGAGGCTAGGGTATGGGCTG
ATCCCTGGATCCAAATGAACAGCCTGCAGGGGAGTGGTCACCAGCTCTCT
GTCACCCAGAGGCTGACCTTGCACTCTGCTGGTTGTCTAGGTAGACCAGA
GTGTATTATGTGG
CGATGAAGTGTGAGGCCTGGGGGCGCCTGGCCTTCCAAACAAGGNGAACT
ATAGAAGGTCTTGCATAAAACGAGGAGAGAAATTAAAGAGATGGGAGAGG
TAGGAAGCTGTGCTCTTATCCGGGAACACGGTTTTGGGGTTGGAGTTAGC
TCCTTGTTGGAGTGTGCTACATGGCTGGCTTTATGAGTTCCTTTGCTGCT
AGGGATGTCCTTGAGCTAGGATTCCATCACTAGTACCACATGCGCTCCTT
TTTCTAAGAAAGGCTTTAAGTAGAAACAACTATTTTGCAATGATAGTGAC
TAACCTCATGGCTTCATATTTTTTTTTGACAGAATTTTTTTAATTCCATT
TATTGCACTTTTTTTTTCTCCCCCCCCCCACCACATGTCAGCTTTTTTCT
TCTCTACTCAGGTCGCACGGACTGAAAAAACTAATCTTGCATTGGGGAGG
CTTATATGAGAACTTAGTAAAATAGTTCTTTTATTCTCTTCTAGTAAAGA
AAAAACACAGAGCGACTTTATTTAGTTCTATACTTTCCCAAATATTTCTA
AACGCAATTCAACTGGAATGCACATATATAAATTATTTAATAAAAAAACC
TCCTAGGCTCTGGTGACCTCAGGTACTGAGTTCCCAAAGACTCAGGCCTG
TGAGATCACACTTTTTTCCTTTTCCTTTTTTGGCGAAAGGGTCTCTTTCT
GCGTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_m23.b1 MSMg01no130_m23.b1 CHROMAT_FILE:
MSMg01no130_m23.b1 PHD_FILE: MSMg01no130_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:47 2005
         (194 letters)



>mm_chr5_143672877_143673470
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatcatcaggcttggtggtaagcttctttacccactgagacatctcactggcccatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ggatcatcaggcttggtggtaagcttctttacccactgagacatctcactggcccgtgtt 260

                                                                       
Query: 61  tgctcattggtttttctttacggcaagttctcatacagtagcccagcctggcctcaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctcattggtttttctttacggcaagttctcatacagtagcccagcctggcctcaaatc 320

                                                                       
Query: 121 caaggccaagcacttagattagaagcacgctccattgaaatgggggaacttattaaagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggccaagcacttagattagaagcacgctccattgaaatgggggaacttattaaagtt 380

                         
Query: 181 cttgggagagtttt 194
           ||||||||||||||
Sbjct: 381 cttgggagagtttt 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no130_m23.g1 MSMg01no130_m23.g1 CHROMAT_FILE:
MSMg01no130_m23.g1 PHD_FILE: MSMg01no130_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:48 2005
         (182 letters)



>mm_chr5_143841491_143842072
          Length = 582

 Score =  335 bits (173), Expect = 1e-96
 Identities = 179/181 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttttggggttggagttagctccttgttggagtgtgctacatggctggctttatgagttc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttggggttgtagttagctccttgttggagtgtgctacatggctggctttatgagttc 322

                                                                       
Query: 61  ctttgctgctagggatgtccttgagctaggattccatcactagtaccacatgcgctcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgctgctagggatgtccttgagctaggattccatcactagtaccacatgcgctcctt 262

                                                                       
Query: 121 tttctaagaaaggctttaagtagaaacaactattttgcaatgatagtgactaacctcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tttctaagaaaggctttaagtagaaacaactattttgcaatgatagtgactaatctcatg 202

            
Query: 181 g 181
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)