BAC Information

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BAC

Clone NameMSMg01-131C05
Chromosome5 (Build37)
Map Location 57,067,354 - 57,067,682
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131C05.T7 (MSMg01no131_c05.b1)MSMg01-131C05.TJ (MSMg01no131_c05.g1)
ACCAG338717AG338718
length693704
length of high quality
(start - end)
430 (69 - 498)329 (374 - 702)
definitionCHROMAT_FILE: MSMg01no131_c05.b1 PHD_FILE: MSMg01no131_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:15 2005CHROMAT_FILE: MSMg01no131_c05.g1 PHD_FILE: MSMg01no131_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCATAATTTGCGGCGCTAAACACTCCTTTCAAAGAGGACCGCGGATT
CCGTATTTCATCTGAATTAATTTTCTGAATTGATTATTTGATTTTTTTTG
GTTTCTTGTTCCTTGTATATTTGCATATTTTTCTCTATCAGATGTGTTAT
AAATCATATCCCTTTTTATAGGCTGCCCCTTCGTTCAATAGACAATATCC
TTTGCCTACAGAGGAATTTTAGTTTCATGAAGTCTCATATGTTGTAAATC
TTAGTGCACACTACCAGTGTTCTTCTCAGAACGTTGTCTCCTGTGCTAAT
GCTTTCAGGCTAGTCCCCACTTTCCCTATTTCAGGTTTAGGGCATCTGGG
TTTATGCTGAGTTTTTTCATTCACTTGAATATGAGTTTTGTAAGGTTAGT
GTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATAT
ATATATATATACACACACACACACACACACACACACACACACACTCTATA
ACACACATATATGTGTGTGTGAGAAAAAACAGTATATACACAGATGCACC
CCCCGAGAGAGAGAGAGAGAGGGCGCGCGCGAGAGTGTGTGCACACGCGA
GAGAGCGCTCTGAGAGAAAAACAGAGTGTGCGCGCGCACATATACTATAT
ATGAGTGTGTGTTGAAAAAAAATTCCTGTGTGTGGAGAGGAGA
CCTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAATAGCTAGGAAGAGAGAGCTT
ATTTAGAGGTAAGCATTTGACCTGCTAAGCACCTCGGGCAACAAAAGATA
CCAATTGATTAAGTTAGTTACTAAAGGATGCTGAGGGAGGAAGGCATCTT
CTACAAATGTGAAAATAGTATATAGTGTATAGTATGATAAATGGAAAACT
AGGGCATGTGGATTAAATGGGGAGAAGGTGACAAGAGTGCTGGGTAAATG
AGGGCATATAGGCTAGGACAGCTAACACCAAAGCCCTTTTGACAACACTT
ATGGAAACATATTTCTATAGCAGCTTCCTAAAACATTCAAATTTAAATGA
AGTAACTATATGATTTGAATGACAATAACCCAAATATAGAAAGAACTTAT
GACATCAAATAAGACTTCTAGTGTGAGGAATGGAATACATCTTACTGAGT
TGTTTGCTGATAAAGGAACAGAGGGCAAGTAATATGTATAAACTATAGTA
TATATTTTTAAAAATTAAAACAACTTAATCCACTTTCCTTCCCAGGACCC
TCCTTCCTTCCCCAATTGTGATTGCTTTCTTCTCTCTCCCAAGTGGGACT
GAGACGTCCTCACTTAGGCACTTCAGCTTGTTGACCTTTTTGAGTTCTGT
GGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_c05.g1 MSMg01no131_c05.g1 CHROMAT_FILE:
MSMg01no131_c05.g1 PHD_FILE: MSMg01no131_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:15 2005
         (329 letters)



>mm_chr5_57067154_57067882
          Length = 729

 Score =  613 bits (317), Expect = e-180
 Identities = 326/329 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctaaaacattcaaatttaaatgaagtaactatatgatttgaatgacaataacccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcctaaaacattcaaatttaaatgaagtaactatatgatttgaatgacaataacccaa 260

                                                                       
Query: 61  atatagaaagaacttatgacatcaaataagacttctagtgtgaggaatggaatacatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatagaaagaacttatgacatcaaataagacttctagtgtgaggaatggaatacatctt 320

                                                                       
Query: 121 actgagttgtttgctgataaaggaacagagggcaagtaatatgtataaactatagtatat 180
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 321 actgagttgtttgctgataaaggaactgagggcaagtaatatgtaaaaactatagtatat 380

                                                                       
Query: 181 atttttaaaaattaaaacaacttaatccactttccttcccaggaccctccttccttcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttaaaaattaaaacaacttaatccactttccttcccaggaccctccttccttcccc 440

                                                                       
Query: 241 aattgtgattgctttcttctctctcccaagtgggactgagacgtcctcacttaggcactt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 aattgtgattgctttcttctctctcccaagtgggactgagacgtcctcacttgggcactt 500

                                        
Query: 301 cagcttgttgacctttttgagttctgtgg 329
           |||||||||||||||||||||||||||||
Sbjct: 501 cagcttgttgacctttttgagttctgtgg 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)