BAC Information

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BAC

Clone NameMSMg01-131H24
Chromosome5 (Build37)
Map Location 60,041,858 - 60,042,100
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131H24.T7 (MSMg01no131_h24.b1)MSMg01-131H24.TJ (MSMg01no131_h24.g1)
ACCAG338987AG338988
length706721
length of high quality
(start - end)
244 (83 - 326)597 (75 - 671)
definitionCHROMAT_FILE: MSMg01no131_h24.b1 PHD_FILE: MSMg01no131_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:44 2005CHROMAT_FILE: MSMg01no131_h24.g1 PHD_FILE: MSMg01no131_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCTTTAAATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAG
AGCCGCGGAATTCTTCAGATTGCAGATGACATGAAATGCATATTTGAATA
TAATAACCTGCCTTCTTCTCAGGTCACTGGCTATGTGAATAAAGACCTGC
TTAAATATTTAATTTCTGTCTCTTTACGTTGGCGTATATGGTGACAGGCA
ACAGGATCCAGCCCTGTTATAGCAATAGCAAACTGCTTTTATATAGAACA
TTCCTTGTCCAGGTGTTTGATCATCTCTTCGATCAGCTTTTAATGCAGGG
GACAATAATATGTATTTGTTCTTCATCATATAGTTGGTGGTTAAACAATG
ATCTGTTGGTCTTTGGGGTGTTTAAAATATTAAGTCTTCATACAGGATTA
GAGGTACACTCTGATTTAATTCTTATTAATAATGCAAATGAGAATCCCTG
GAAATGAACTATGCCTGAAGAATCTGATTGACTGAACAGAACCCCAGTGA
TTTAGAAAATTTTGGAATATTCTGGGTAAGGAGGTGAATTACCTGACTTT
AGACTAGCTGTAGGCCGCTGGGCAGCGAATGCTTATGACTTCTGACCCCT
GTGATGGAAAAAAATTGTGTGATTAAAATATAAAAAGTCTGTTGGAATGC
ATTAACTTAGTACTCAGTTAACTTTTATCTTCCCAAAGCTAAACAAAGCA
TCTTTC
TACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACTAAGGAATACCGAATGGCAGAG
AAGCACCTGATAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGACTGCTTCTATTTCTTTAGGTGTC
ATGAGACTGTTTAGATCATTTATCTGATTCTGATTTAACTTTGGTACCTA
GTATCTGTCTGTTTCCTGGTATCTGATAATTGTCCATTTCATCTGGATTT
TCCACTTTTGTTGAGTATAGGCTTTTGTAGGAGGATCTGATGATTGTTTG
TATCTCCTTGGTTTCTATTGTTATGTCTCCCTTTTCTGTTCTGATTTTGT
TGATTTGGATACTGTCTTTGTGCCCTATGATTTGTCTGACTAAGGGTTTA
TCTATCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGCTTTTCAAAGAAT
AAGCTCTTGGTTTGGTTGATTCTTTGTATAGTTCTTTTTATTTCTACTTG
GTTGATTTCAGCCATGAGTTTGATTATTTCCTGAATTCTACTTCTCTTGG
GTCTATTTTCTTCTTTTTGTTCTAGAGAATTCAGATGTGCTGTCAAGCTG
CTAGTGTATGCTATCTCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_h24.b1 MSMg01no131_h24.b1 CHROMAT_FILE:
MSMg01no131_h24.b1 PHD_FILE: MSMg01no131_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:44 2005
         (244 letters)



>mm_chr5_60041658_60042301
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaatgcatatttgaatataataacctgcc-ttcttctcaggtcactggctatgtgaata 59
           |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 201 gaaatgcatatttgaatataataacctgccctt-ttctcaggtcactggctatgtgaata 259

                                                                       
Query: 60  aagacctgcttaaatatttaatttctgtctctttacgttggcgtatatggtgacaggcaa 119
           |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
Sbjct: 260 aagacctgcttaaatatttaatttctgtctctttacattggcgtatatggtgataggcta 319

                                                                       
Query: 120 caggatccagccctgttatagcaatagcaaactgcttttatatagaacattccttgtcca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caggatccagccctgttatagcaatagcaaactgcttttatatagaacattccttgtcca 379

                                                                       
Query: 180 ggtgtttgatcatctcttcgatcagcttttaatgcaggggacaataatatgtatttgttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtgtttgatcatctcttcgatcagcttttaatgcaggggacaataatatgtatttgttc 439

               
Query: 240 ttca 243
           ||||
Sbjct: 440 ttca 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)