MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-131L07
Chromosome	5 (Build37)
Map Location	96,770,293 - 96,770,421
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100041296, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
Downstream gene	Fras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100041296 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 166 ESTs, 48 Proteins

name	EG666159 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666159 MGI:3645939
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	LOC666164 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666164
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	EG666169 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666169 MGI:3643214
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 45 Proteins

name	D5Ertd577e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320549 MGI:1261918
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041354 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 62 ESTs, 56 Proteins

name	LOC100040503 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040503
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC666187 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 6 ESTs, 21 Proteins

name	EG622731 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622731 MGI:3643967
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 46 Proteins

name	LOC100041380 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041380
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 118 ESTs, 10 Proteins pseudo : _no_value

name	EG666203 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666203 MGI:3704107
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 44 Proteins

name	EG666209 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666209 MGI:3648891
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 47 Proteins

name	LOC665943 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 68 ESTs, 57 Proteins

name	LOC433921 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433921
definition	note : glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo : _no_value

name	Cxcl13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:55985 MGI:1888499
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666231 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666231 MGI:3647399
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 429 ESTs, 19 Proteins pseudo : _no_value

name	Cnot6l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231464 MGI:2443154
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100040559 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040559
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Mrpl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94061 MGI:2137202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Fras1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231470 MGI:2385368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Anxa3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11745 MGI:1201378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666266 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666266 MGI:3648644
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	LOC670358 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670358
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Bmp2k (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140780 MGI:2155456
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Paqr3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231474 MGI:2679683
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040598 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040598
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	EG433923 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433923 MGI:3647980
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666293 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666293 MGI:3645024
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100041296 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254097 GeneID:100041296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 134 ESTs, 3 Proteins product : similar to Expressed sequence C87414, transcript variant 3 transcript_id : XM_001476611.1

name	LOC100041296 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254095 GeneID:100041296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 158 ESTs, 45 Proteins product : similar to Expressed sequence C87414, transcript variant 2 transcript_id : XM_001476589.1

name	LOC100041296 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254093 GeneID:100041296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 150 ESTs, 45 Proteins product : similar to Expressed sequence C87414, transcript variant 1 transcript_id : XM_001476574.1

name	LOC100041296 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254099 GeneID:100041296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 135 ESTs, 3 Proteins product : similar to Expressed sequence C87414, transcript variant 4 transcript_id : XM_001476631.1

name	EG666169 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374970 GeneID:666169 MGI:3643214
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 45 Proteins product : predicted gene, EG666169 transcript_id : XM_982113.1

name	D5Ertd577e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343011 GeneID:320549 MGI:1261918
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 5, ERATO Doi 577, expressed transcript_id : NM_177187.2

name	LOC100041354 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254103 GeneID:100041354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 41 ESTs, 53 Proteins product : similar to D5Ertd577e protein, transcript variant 1 transcript_id : XM_001476772.1

name	LOC100041354 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254105 GeneID:100041354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 44 ESTs, 53 Proteins product : similar to D5Ertd577e protein, transcript variant 2 transcript_id : XM_001476793.1

name	LOC100041354 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254107 GeneID:100041354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 58 ESTs, 53 Proteins product : similar to D5Ertd577e protein, transcript variant 3 transcript_id : XM_001476810.1

name	LOC100041354 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254109 GeneID:100041354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 31 ESTs, 3 Proteins product : similar to D5Ertd577e protein, transcript variant 4 transcript_id : XM_001476832.1

name	LOC666187 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94374973 GeneID:666187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 6 ESTs, 21 Proteins product : predicted gene, EG666089 transcript_id : XM_982184.1

name	EG622731 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82897870 GeneID:622731 MGI:3643967
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 46 Proteins product : predicted gene, EG622731 transcript_id : XM_889897.1

name	EG666203 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374975 GeneID:666203 MGI:3704107
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 44 Proteins product : predicted gene, EG666203 transcript_id : XM_982294.1

name	EG666209 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374977 GeneID:666209 MGI:3648891
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 47 Proteins product : predicted gene, EG666209 transcript_id : XM_982325.1

name	LOC665943 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94374930 GeneID:665943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 47 ESTs, 54 Proteins product : similar to D5Ertd577e protein, transcript variant 3 transcript_id : XM_982508.1

name	LOC665943 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254114 GeneID:665943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 46 ESTs, 54 Proteins product : similar to D5Ertd577e protein, transcript variant 4 transcript_id : XM_982542.2

name	LOC665943 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94374934 GeneID:665943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 60 ESTs, 54 Proteins product : similar to D5Ertd577e protein, transcript variant 5 transcript_id : XM_982565.1

name	LOC665943 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254115 GeneID:665943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 3 Proteins product : similar to D5Ertd577e protein, transcript variant 2 transcript_id : XM_982469.2

name	Cxcl13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130712 GeneID:55985 MGI:1888499
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) ligand 13 transcript_id : NM_018866.2

name	Cnot6l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121674806 GeneID:231464 MGI:2443154
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCR4-NOT transcription complex, subunit 6-like transcript_id : NM_178854.3

name	Cnot6l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450298 GeneID:231464 MGI:2443154
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCR4-NOT transcription complex, subunit 6-like transcript_id : NM_144910.1

name	Mrpl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84875527 GeneID:94061 MGI:2137202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L1 transcript_id : NM_053158.2

name	Mrpl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84875531 GeneID:94061 MGI:2137202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L1 transcript_id : NM_001039084.1

name	Fras1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126157514 GeneID:231470 MGI:2385368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Fraser syndrome 1 homolog (human) transcript_id : NM_175473.3

name	Anxa3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7304886 GeneID:11745 MGI:1201378
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : annexin A3 transcript_id : NM_013470.1

name	EG666266 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374982 GeneID:666266 MGI:3648644
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : predicted gene, EG666266 transcript_id : XM_982666.1

name	LOC670358 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254009 GeneID:670358
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical LOC670358 transcript_id : XM_001474948.1

name	Bmp2k (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18129621 GeneID:140780 MGI:2155456
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BMP2 inducible kinase transcript_id : NM_080708.1

name	Paqr3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130829 GeneID:231474 MGI:2679683
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : progestin and adipoQ receptor family member III transcript_id : NM_198422.2

name	LOC100040598 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254011 GeneID:100040598
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100040598 transcript_id : XM_001474966.1

name	EG433923 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486992 GeneID:433923 MGI:3647980
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG433923 transcript_id : NM_001081233.1

name	EG666293 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374988 GeneID:666293 MGI:3645024
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG666293 transcript_id : XM_982814.1

name	LOC100041296 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254094 GeneID:100041296
definition	codon_start : 1 product : similar to Expressed sequence C87414 isoform 1 protein_id : XP_001476624.1

name	LOC100041296 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254096 GeneID:100041296
definition	codon_start : 1 product : similar to Expressed sequence C87414 isoform 2 protein_id : XP_001476639.1

name	LOC100041296 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254098 GeneID:100041296
definition	codon_start : 1 product : similar to Expressed sequence C87414 isoform 3 protein_id : XP_001476661.1

name	LOC100041296 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254100 GeneID:100041296
definition	codon_start : 1 product : similar to Expressed sequence C87414 isoform 4 protein_id : XP_001476681.1

name	EG666169 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374971 GeneID:666169 MGI:3643214
definition	codon_start : 1 product : hypothetical protein protein_id : XP_987207.1

name	D5Ertd577e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893195 GeneID:320549 MGI:1261918
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC320549 protein_id : NP_796161.1

name	LOC100041354 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254104 GeneID:100041354
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001476822.1

name	LOC100041354 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254106 GeneID:100041354
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001476843.1

name	LOC100041354 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254108 GeneID:100041354
definition	codon_start : 1 product : hypothetical protein isoform 3 protein_id : XP_001476860.1

name	LOC100041354 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254110 GeneID:100041354
definition	codon_start : 1 product : hypothetical protein isoform 4 protein_id : XP_001476882.1

name	LOC666187 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94374974 GeneID:666187
definition	codon_start : 1 product : similar to CDNA sequence BC061212 protein_id : XP_987278.1

name	EG622731 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82897871 GeneID:622731 MGI:3643967
definition	codon_start : 1 product : hypothetical protein protein_id : XP_894990.1

name	EG666203 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374976 GeneID:666203 MGI:3704107
definition	codon_start : 1 product : similar to CDNA sequence BC061212 protein_id : XP_987388.1

name	EG666209 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374978 GeneID:666209 MGI:3648891
definition	codon_start : 1 product : hypothetical protein protein_id : XP_987419.1

name	LOC665943 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94374931 GeneID:665943
definition	codon_start : 1 product : hypothetical protein isoform 3 protein_id : XP_987602.1

name	LOC665943 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94374933 GeneID:665943
definition	codon_start : 1 product : hypothetical protein isoform 4 protein_id : XP_987636.1

name	LOC665943 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94374935 GeneID:665943
definition	codon_start : 1 product : hypothetical protein isoform 5 protein_id : XP_987659.1

name	LOC665943 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94374937 GeneID:665943
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_987563.1

name	Cxcl13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9256521 CCDS:CCDS19447.1 GeneID:55985 MGI:1888499
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA]; GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0048535 - lymph node development [Evidence IMP] codon_start : 1 note : B lymphocyte chemoattractant; small inducible cytokine subfamily B (Cys-X-Cys), member 13 product : chemokine (C-X-C motif) ligand 13 protein_id : NP_061354.1

name	Cnot6l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121674807 GeneID:231464 MGI:2443154
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : CCR4-NOT transcription complex, subunit 6-like isoform 2 protein_id : NP_849185.2

name	Cnot6l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450299 CCDS:CCDS19448.1 GeneID:231464 MGI:2443154
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : CCR4-NOT transcription complex, subunit 6-like isoform 1 protein_id : NP_659159.1

name	Mrpl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84875528 CCDS:CCDS19449.1 GeneID:94061 MGI:2137202
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0015934 - large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IDA] GO_process : GO:0006412 - protein biosynthesis [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : mitochondrial ribosomal protein L1 isoform 1 protein_id : NP_444388.2

name	Mrpl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84875532 GeneID:94061 MGI:2137202
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0015934 - large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IDA] GO_process : GO:0006412 - protein biosynthesis [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : mitochondrial ribosomal protein L1 isoform 2 protein_id : NP_001034173.1

name	Fras1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126157515 CCDS:CCDS19450.1 GeneID:231470 MGI:2385368
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007154 - cell communication [Evidence IEA]; GO:0002009 - morphogenesis of an epithelium [Evidence IMP] codon_start : 1 note : blebbed product : Fras1 protein protein_id : NP_780682.3

name	Anxa3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304887 GeneID:11745 MGI:1201378
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005544 - calcium-dependent phospholipid binding [Evidence IEA]; GO:0019834 - phospholipase A2 inhibitor activity [Evidence IEA]; GO:0004859 - phospholipase inhibitor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : annexin III product : annexin A3 protein_id : NP_038498.1

name	EG666266 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374983 GeneID:666266 MGI:3648644
definition	codon_start : 1 product : hypothetical protein protein_id : XP_987760.1

name	LOC670358 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254010 GeneID:670358
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474998.1

name	Bmp2k (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18129622 GeneID:140780 MGI:2155456
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0019208 - phosphatase regulator activity [Evidence IDA]; GO:0004672 - protein kinase activity [Evidence IDA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0030500 - regulation of bone mineralization [Evidence IDA] codon_start : 1 product : BMP2 inducible kinase protein_id : NP_542439.1

name	Paqr3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38259216 CCDS:CCDS19451.1 GeneID:231474 MGI:2679683
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : progestin and adipoQ receptor family member III protein_id : NP_940814.1

name	LOC100040598 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254012 GeneID:100040598
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475016.1

name	EG433923 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486993 GeneID:433923 MGI:3647980
definition	codon_start : 1 product : predicted gene, EG433923 protein_id : NP_001074702.1

name	EG666293 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374989 GeneID:666293 MGI:3645024
definition	codon_start : 1 product : hypothetical protein protein_id : XP_987908.1

name	EG666159 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666159
definition	number : 1 pseudo : _no_value

name	EG666159 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666159
definition	number : 2 pseudo : _no_value

name	EG666159 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666159
definition	number : 3 pseudo : _no_value

name	LOC666164 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666164
definition	number : 3 pseudo : _no_value

name	LOC666164 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666164
definition	number : 2 pseudo : _no_value

name	LOC666164 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666164
definition	number : 1 pseudo : _no_value

name	LOC100040503 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040503
definition	number : 1 pseudo : _no_value

name	LOC100040503 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040503
definition	number : 2 pseudo : _no_value

name	LOC100040503 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040503
definition	number : 3 pseudo : _no_value

name	LOC100040559 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040559
definition	number : 1 pseudo : _no_value

name	LOC100040559 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040559
definition	number : 2 pseudo : _no_value

name	LOC100041380 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254111 GeneID:100041380
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 118 ESTs, 10 Proteins product : similar to D5Ertd577e protein pseudo : _no_value transcript_id : XR_032968.1

name	EG666231 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94374979 GeneID:666231 MGI:3647399
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 429 ESTs, 19 Proteins product : predicted gene, EG666231 pseudo : _no_value transcript_id : XR_001849.1

clone name	MSMg01-329P19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-197O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140J24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-447I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231L06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-261P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163A21
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-131L07.T7 (MSMg01no131_l07.b1)	MSMg01-131L07.TJ (MSMg01no131_l07.g1)
ACC	AG339137	AG339138
length	751	1,216
length of high quality (start - end)	129 (145 - 273)	---
definition	CHROMAT_FILE: MSMg01no131_l07.b1 PHD_FILE: MSMg01no131_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:01 2005	CHROMAT_FILE: MSMg01no131_l07.g1 PHD_FILE: MSMg01no131_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:01 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC GGAATTCCTATTATTTCCCAAAATATAATTGTTTTGTTTTATTCGTCACT AATCTCTTACTGTTTAAGATTACCCCCAGATTAGGATGAAGACTCAAATT TTATTGTAGATATATGTATGTACCAAAATAATGCACTACGTATCCAAAAT AATCATGACTGGTGTTTTCGGGGATCTTCTGGGGGCCTTGAAATATTGTG TGTGATGGGGAGAACCACTAGAGAGAAATCAATCCGGAGGAACTTGATCA TGAAAGGAGCCAGGCTCTCATCATGGAACTCTCCAGTACTATTAGGATTT GTGCTCTTCTTTTGTTTTCAGAGCCTCTGTGAGATTTAGACACAGCACAG ATATTCTGTTGAAGAGAGTGTCCAATTAAATGTAACAATGGCACCTTACA CAGAGCTTAAGACATCTGACGACATATGTGTTAACGATGGCATAAAATCC TCTTATAGTTATATGACATTAGATGAGTATTGTTTCAGTGCTAGAGCATT TAGTTGAGTGTGTTCTAAATTACTAGGATTCAATTTCCAACCCCTGTCTA ATATATTGAATTAATTTATAATCTTCTTTTAACCTTATATCCACACATTT ACTCTTCTCATTTAAATAGTTCTAGTCCAATCCCATGAGTCCATGGTCTA TTTTTTATTTTATGCTCCCACACAACGACAAAACATATCACCATCCCCCA T	CCGCGAATGATCTATTGGNGGTAGGNCTTGGTNGGNGCCGGGCCTGTGTT TCCAAGAGNAAGGGGNNGGNNGANNGNTAGTANGNAAGTGTTCTGCATGA TAAATTAGAGTGAGATNTTNNAATTAGTTTTTGATTTAATTTNTTTTTAA TTCGTGNTATTTTTTTATTGTTATTGTCTCCCGCCTAATGGTNCATGTTA AAATAAATATACATCATTATACACAATAGACTAATACCTACAACTACCAA CAGTGGAAGCATCGTNCGTTAGTGCTGTGCTGCCAGCGCTCGTACCTTCG GATTCTTCGGCGGTGCTCTCGCGTCTGCTTCNGTAGTCCCTCATCCATAG AGTTCAGATCGCACTGGTCCGCTATTCTCTCTTGTGTATAACTCTGTCGC GCAATGCTCGTCGAGTACTTTATGACTATCTGTTCTTGTGTAACTGTCTT TACTCTTGTGTCATCATAATCATATATGCTATACTCTCTTTTTGTTATAT TATACTTTACGTGTATGCTGATTTTACACTTGATATGTAAGTATACATAC GATCTATATTGTTTGATATCCAGCCGCGACCTCCCACAAGACACTTGATA TAGACATGAGTATGATTAACGATTCTGTGTCTGTGCTATGATACCCGATA ACATGCACTCTATAACTAATACTATATACTAACCCTAACTTGCTAGTCGA CTACCATATGACAAACAAATCTTTATAATATCTATATATTATGAATATAT TGTATTCTCATCCAGTGCGTCTTAGATCAACTCGCGCACATACGCCTGTG ATAACGCACACCATCTTACGTGTGTTCATTATTATACTTACCGCATACTC ACTAATTCATTTGATTATATGTTCTCAACCTTTCTCACTCGCTCACACTG CGGTCACATATCCACTAATGATACATTATGTAATACTAGTTTGTATAGTA TTATTATATAATTATTGATATGTAATCAACCATCAACAATCTATGCCTAC TATGAATCATCTCTATAATCATCGTCGCATCTGATCGAGCGTCTCGCTTC TATCTNCTCAAATATACACTACTTATTCACTCTATTTATATTCGCTTCAT ACTTCATATGTACTTAATATCTATATGCATATCATCACTATCTAAATACT CACTACGCACTCGCTCACTCTACGAGTCGCTCATCACCCGCTCTACTATA TTATCTCTCTACTCAA
quality values	Open. Hide. 6 6 8 8 8 6 6 6 8 8 16 18 25 18 19 18 21 24 28 27 23 14 14 11 22 19 33 18 17 10 11 11 21 21 9 12 14 9 9 9 9 9 9 9 10 9 10 15 22 27 30 33 33 33 33 33 33 42 42 39 25 22 11 10 10 10 10 14 12 10 10 10 10 10 17 24 30 37 24 33 33 33 34 26 26 23 24 23 34 43 43 32 27 17 17 30 30 31 33 32 37 39 43 47 57 48 48 48 48 43 39 36 36 36 28 22 11 10 10 10 10 10 12 11 13 16 11 12 15 31 23 28 14 12 12 23 23 24 23 23 23 20 30 26 20 20 21 24 40 40 40 37 37 31 31 24 28 22 22 22 31 32 42 33 30 30 30 42 44 48 48 47 48 47 47 39 39 39 37 30 29 21 24 18 36 23 36 36 41 41 41 41 27 27 20 20 20 36 36 32 32 16 17 16 32 32 57 42 42 32 42 33 33 33 43 43 44 44 44 43 29 21 24 24 32 32 50 44 43 32 20 17 28 28 38 32 38 23 29 35 32 32 35 46 46 46 27 27 17 20 20 38 36 27 26 18 13 12 24 18 18 24 32 42 43 43 29 21 21 13 13 12 15 15 18 11 18 13 14 10 10 11 12 12 11 11 12 15 15 20 32 36 36 42 37 32 28 32 23 25 23 32 23 28 28 24 32 21 14 14 14 32 24 28 28 28 37 24 30 13 13 13 13 12 12 11 11 12 25 30 43 43 31 31 22 28 28 33 33 37 39 30 30 18 16 23 25 16 20 20 22 23 23 23 28 28 33 30 30 30 28 28 15 12 12 21 25 19 15 11 11 11 11 12 15 15 21 21 11 10 10 10 11 12 16 18 21 11 11 10 10 8 8 10 8 8 11 22 10 10 6 6 8 10 13 8 9 13 13 13 12 15 10 10 13 12 12 15 15 13 18 18 18 15 16 18 22 16 17 17 11 9 10 9 9 9 9 23 18 12 10 10 10 10 10 10 14 13 16 11 11 11 12 12 18 18 29 23 12 8 8 8 8 10 19 24 24 26 13 12 10 10 10 10 10 19 23 18 11 10 10 10 12 11 11 11 23 24 12 14 13 8 8 8 15 19 24 37 27 28 22 22 22 32 24 29 21 16 13 11 11 11 12 18 16 10 10 6 7 6 7 8 8 10 8 8 8 8 10 10 10 9 8 8 8 8 6 6 9 10 10 11 11 11 11 11 11 12 18 12 8 8 8 12 10 18 11 10 10 10 10 10 9 9 9 8 10 11 9 9 9 9 9 9 9 9 11 12 12 14 9 9 9 9 12 10 10 10 9 9 9 9 11 12 10 8 8 8 8 8 6 6 10 7 7 10 8 11 10 9 9 9 9 9 10 8 8 8 8 8 10 10 10 10 10 10 14 8 8 8 8 8 8 9 8 8 8 6 6 6 8 9 9 10 8 8 8 8 8 8 10 10 10 8 6 6 10 10 10 10 10 11 11 8 8 8 9 9 10 13 10 10 10 10 9 15 17 15 11 10 11 9 9 13 10 10 8 8 8 10 10 10 10 10 8 10 12 22 15 10 9 9 9 10 12 12 12 8 8 8 8 8 10 10 8 8 8 10 8 8 11 8 9 9 11 11 11 13 11 11 10 8 8 8 8 8 12 10 11 11 8 8 8 8 8 8 8 8 8 10 8	Open. Hide. 6 6 6 6 6 6 8 11 8 8 9 8 8 11 8 8 11 3 0 3 8 9 9 8 3 0 3 8 8 8 7 3 0 3 3 0 3 14 7 9 9 9 9 15 10 8 7 7 7 9 9 9 8 7 6 6 6 3 0 3 8 8 10 13 3 0 0 3 3 0 0 3 3 0 0 3 0 3 10 10 9 3 0 3 0 3 8 8 7 7 6 7 6 6 6 6 6 6 6 6 6 7 9 9 9 7 7 6 6 8 8 8 18 14 15 3 0 3 3 0 0 3 6 6 6 6 6 12 13 19 13 10 8 8 8 10 8 8 8 8 8 3 0 3 8 8 8 7 6 6 6 6 6 8 6 3 0 3 6 6 10 10 8 9 11 10 13 8 8 7 7 7 7 7 8 9 8 6 6 6 7 6 7 6 6 10 10 8 8 8 8 3 0 3 8 8 7 7 6 6 8 8 8 8 7 6 6 6 6 6 9 9 6 6 6 6 8 8 8 8 8 8 8 10 8 6 6 6 6 8 8 6 6 6 6 8 8 8 8 6 6 6 6 8 8 6 6 6 6 8 7 7 6 6 8 6 6 8 8 8 6 8 8 8 3 0 3 6 8 6 10 10 9 10 9 9 9 9 9 15 10 10 8 6 6 6 6 8 8 8 9 13 8 8 8 8 10 17 10 10 10 12 15 13 7 6 6 6 6 6 8 8 8 8 8 8 10 8 10 8 8 8 11 11 8 8 8 10 13 10 3 0 3 8 8 8 8 10 8 6 6 11 6 8 8 8 6 6 8 6 6 6 8 13 11 16 11 9 10 10 10 9 7 8 6 6 10 6 8 8 8 8 8 10 10 8 8 10 8 8 10 10 12 12 6 6 6 6 6 6 6 6 11 11 12 10 9 9 10 11 6 6 6 6 8 10 8 6 8 6 6 6 6 10 10 8 8 8 8 8 8 9 8 8 8 8 8 10 10 10 10 10 9 10 12 12 8 8 8 13 10 10 8 7 7 8 8 11 9 13 9 8 6 6 7 7 6 6 8 10 6 7 8 8 8 8 8 10 8 7 7 7 10 8 8 8 8 7 6 6 6 6 8 8 8 10 7 8 8 8 8 8 7 7 7 7 9 9 8 8 8 8 12 10 10 10 10 10 13 11 8 6 6 6 10 6 8 8 8 8 8 8 8 8 8 8 10 8 8 8 13 8 8 12 10 13 10 8 8 8 8 10 8 8 8 8 6 10 6 6 8 6 6 8 6 6 6 7 6 6 6 6 10 6 6 6 6 8 8 8 6 6 6 6 8 8 8 8 10 10 10 10 12 11 10 10 8 8 6 6 6 6 8 8 9 8 9 9 10 9 13 13 8 8 8 8 9 9 8 8 8 10 8 8 8 10 10 10 6 6 8 6 6 8 8 8 8 8 8 10 8 8 8 11 13 10 9 8 8 10 10 10 10 10 10 10 8 6 6 8 8 13 14 12 6 6 6 8 8 8 8 6 6 8 8 8 8 9 10 8 7 6 6 8 8 8 6 8 6 6 6 8 8 10 10 8 8 6 6 8 6 6 8 8 8 8 8 8 8 8 10 12 8 8 6 6 6 6 6 6 9 8 8 6 8 7 6 8 8 13 11 10 10 8 8 8 8 8 11 12 12 10 10 10 8 8 10 8 9 6 8 6 6 8 8 8 10 15 8 6 8 6 6 7 6 10 8 8 8 8 6 10 6 6 8 8 10 10 10 10 10 12 10 10 11 8 10 8 9 10 10 8 8 8 8 10 8 8 8 8 8 8 9 9 8 7 7 7 9 10 9 7 7 8 7 6 6 8 8 12 10 8 8 8 8 6 6 6 6 6 8 8 8 10 8 8 8 8 8 7 7 8 8 8 8 8 8 8 8 8 8 8 8 8 8 13 10 10 8 8 8 8 8 8 8 6 6 6 6 13 10 8 8 6 6 8 8 10 10 10 7 7 6 6 10 6 6 6 6 6 6 8 10 10 10 6 6 8 8 8 8 8 8 8 8 8 10 8 8 9 8 8 8 7 8 6 6 6 6 8 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 9 10 8 6 6 6 7 8 8 8 8 6 9 9 7 12 8 8 8 8 8 8 8 8 9 6 8 6 6 6 9 7 8 7 8 8 10 8 8 8 8 8 10 15 12 11 8 8 8 6 6 6 7 7 6 8 6 8 8 8 8 8 8 8 8 8 10 10 6 6 6 8 8 8 8 8 8 6 6 6 7 8 12 12 19 17 17 11 11 10 8 8 9 9 8 8 8 8 8 8 8 8 6 6 6 8 8 8 8 8 6 6 6 6 6 6 6 8 8 8 8 9 10 9 9 10 10 9 7 3 0 3 6 7 7 8 8 9 8 11 10 8 8 8 10 10 10 13 13 15 10 11 11 11 10 8 8 8 8 9 8 8 8 8 8 8 8 6 6 6 6 7 7 7 8 8 8 6 7 6 6 8 8 9 10 9 10 10 10 10 10 10 10 10 8 10 9 10 10 10 6 6 6 10 8 13 10 10 6 6 6 6 8 6 6 8 6 6 6 10 10 8 8 8 8 10 8 6 6 8 8 8 8 8 8 8 8 18 9 10 6 6 6 6 6 6 6 6 8 9 8 9 8 8 8 8 6 6 6 8 6 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 7 7 9 9 9 9 8 10 10 8 8 8 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no131_l07.b1 MSMg01no131_l07.b1 CHROMAT_FILE:
MSMg01no131_l07.b1 PHD_FILE: MSMg01no131_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:01 2005
         (129 letters)



>mm_chr5_96770093_96770621
          Length = 529

 Score =  236 bits (122), Expect = 4e-67
 Identities = 128/130 (98%), Gaps = 2/130 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaattttattgtagatatatgtatgtaccaaaataatgcactacgtatccaaaataa-t 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 329 caaattttattgtagatatatgtatgtaccaaaataatgcactacgtatccaaaataagt 270

                                                                       
Query: 60  catgactggtgttttcggggatcttctgggggccttgaaatattgtgtgtgatggggaga 119
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 -atgactggtgttttcggggatcttctgggggccttgaaatattgtgtgtgatggggaga 211

                     
Query: 120 accactagag 129
           ||||||||||
Sbjct: 210 accactagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information