Query= MSMg01no131_l20.b1 MSMg01no131_l20.b1 CHROMAT_FILE:
MSMg01no131_l20.b1 PHD_FILE: MSMg01no131_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:04 2005
(249 letters)
>mm_chr5_56225574_56226220
Length = 647
Score = 424 bits (219), Expect = e-123
Identities = 241/249 (96%), Gaps = 2/249 (0%)
Strand = Plus / Minus
Query: 1 tactcttccatgtagtatttaaaaatatgatttttcattttattttctgtacagttcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 373 tactcttccatgtagtatttaaaaatatgatttttcattttattttctgtaaagttcaaa 314
Query: 61 ctttaaccatacctaaaattcacctcatgatctcattatatgggtagataatatctcaaa 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 313 ctttaaccatgcctaaaattcacctcatgatctcattatatgggtagataatacctcaaa 254
Query: 121 ctttacttttatcttggttgtggaacaaaacattttttttaaagcatcaaaagttctatg 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 253 ctttacttttatcttggttgtggaacaaaaca--ttttttaaagcatcaaaagttctatg 196
Query: 181 ttgcgcttgcagatgggaacctagaatggctgtgctttgagaggcactactagcaccaga 240
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 195 ttgtgcttgcagatgggaacctagaatggctgtgctttgagaggcactaccagcacccga 136
Query: 241 cagagacag 249
|||||||||
Sbjct: 135 cagagacag 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 647
Length adjustment: 9
Effective length of query: 240
Effective length of database: 638
Effective search space: 153120
Effective search space used: 153120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no131_l20.g1 MSMg01no131_l20.g1 CHROMAT_FILE:
MSMg01no131_l20.g1 PHD_FILE: MSMg01no131_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:04 2005
(640 letters)
>mm_chr5_56049418_56050462
Length = 1045
Score = 1149 bits (594), Expect = 0.0
Identities = 630/644 (97%), Gaps = 6/644 (0%)
Strand = Plus / Plus
Query: 1 ttcatttctattcaaggtggtaatagctaggtaatgagtacaatacaacaatgtaaatat 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttcatttccattcaaggtggtaatagctaggtaatgagtacaatacaacaatgtaaatat 261
Query: 61 ctttttaaaaatgaatgattattgaatataaaaatagaaacttatgtacataatgaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctttttaaaaatgaatgattattgaatataaaaatagaaacttatgtacataatgaattt 321
Query: 121 atattcagtcataaagaaaaaacaaatcatgaaattagcaggtaaatgcaactcgtaaca 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 322 atattcagtcataaagaaaaaacaaatcatgaaat-agcaggtaaatgcaactcgtaaca 380
Query: 181 tgcatcaaaatttctttttacagtaaataggaaacaacacaaacatccacaatttgtcaa 240
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatcagaatttcttcttacagtaaataggaaacaacacaaacatccacaatttgtcaa 440
Query: 241 aattcacacaac---taattttggtgcccaaaaccaattggtacagctccaacacaatca 297
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattcacacaacaactaattttggtgcccaaaaccaattggtacagctccaacacaatca 500
Query: 298 tacacctaacgctcaagaaacattagagaagtacaagaccatgaggactaggagttctgc 357
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tatacctaacgctcaagaaacattacagaagtacaagaccatgaggactaggagttctgc 560
Query: 358 ttgagatagtgtttgtgtttatgacagggcacctggactcatgaaatttctttatggttt 417
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 ttgagatagtgtttgtgtttatgacagtgcacctggactcatgaaatttctttatggttt 620
Query: 418 ggattgtagctcagcaagagtatcagttgccatgtcaacataggagagggaaatctcaca 477
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 621 ggattgtagctcagcaagagtatcagttgccatgtcaacataggagggggaactctcaca 680
Query: 478 aggccat--gtttagaagagacacaggcaatcagtgactgctgagctatgaaaaatcagt 535
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggccatatgtttagaagagacacaggcaatcagtgactgctgagctatgaaaaatcagt 740
Query: 536 cctctccagggataagtatgttatgttatcctgatatattatcaatatcatgtggtctgt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctctccagggataagtatgttatgttatcctgatatattatcaatatcatgtggtctgt 800
Query: 596 tgtaaaacatgtctatatgagcaaaaacaaatagtgttaggagg 639
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtaaaacatgtctatatgagcaaaaacaaatagtgttaggagg 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1045
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1035
Effective search space: 652050
Effective search space used: 652050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
