Query= MSMg01no131_p22.b1 MSMg01no131_p22.b1 CHROMAT_FILE:
MSMg01no131_p22.b1 PHD_FILE: MSMg01no131_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:23 2005
(242 letters)
>mm_chr5_118193666_118194307
Length = 642
Score = 468 bits (242), Expect = e-136
Identities = 242/242 (100%)
Strand = Plus / Plus
Query: 1 gctccccctcaccatctctgtaggttcacacccctcccggccatcacactgggagtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctccccctcaccatctctgtaggttcacacccctcccggccatcacactgggagtcaaa 260
Query: 61 gatatcggcgcaggaactgaagtctacagttatttaaggctcttacagattacttccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatatcggcgcaggaactgaagtctacagttatttaaggctcttacagattacttccagg 320
Query: 121 ctgggacaatggctaccctgtaggttcttctttcttccatccatttaaacccctaacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggacaatggctaccctgtaggttcttctttcttccatccatttaaacccctaacact 380
Query: 181 agataagagagatagaggggaaagggggtgccattatcattacttcctgctgattcggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agataagagagatagaggggaaagggggtgccattatcattacttcctgctgattcggag 440
Query: 241 ca 242
||
Sbjct: 441 ca 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no131_p22.g1 MSMg01no131_p22.g1 CHROMAT_FILE:
MSMg01no131_p22.g1 PHD_FILE: MSMg01no131_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:23 2005
(508 letters)
>mm_chr5_118313291_118314197
Length = 907
Score = 890 bits (460), Expect = 0.0
Identities = 475/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Minus
Query: 1 gacagaggcctggcacgctcagaaaaactggtctctggttattattatgcaacatgatga 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 479 gacagaggcctggcacgctcagaaaaactggtctctggttattattatgtaacatgatga 420
Query: 61 tttgggcctcctgggttttaatcagcatgtgggttttttttcccccctgttctatcagtg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 419 tttgggcctcctgggttttaatcagcatgtggg-tttttttcccccctgttctatcagtg 361
Query: 121 tctttttgtgtcagtctctaaggggaccctcccctgcagatgactctgaggattctggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tctttttgtgtcagtctctaaggggaccctcccctgcagatgactctgaggattctggtc 301
Query: 181 actgtgaaatcactgtcttcagggagataaaagctaggctgaatggcctgtcagtttgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 actgtgaaatcactgtcttcagggagataaaagctaggctgaatggcctgtcagtttgtc 241
Query: 241 tctacactctgtagctgaggttcccaacaaattatgcttgcatacgcacgcacacaggca 300
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tctacactctggagctgagattcccaacaaattatgcttgcatacgcacgcacacaggca 181
Query: 301 cacacatgcatacgcgcgcacacacacacatgcatacgcatatgcatgcatgcatatgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cacacatgcatacgcgcgcacacacacacatgcatacgcatatgcatgcatgcatatgca 121
Query: 361 cgcacacacacacatacagagtacataccatggaaaccacacttggacatgagtctctgt 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 cgcacacactcacatacagagtacataccatggaaaccacacttggacatgagtctctgt 61
Query: 421 tgagcactttgcttggtctccgtgtatttctttcctttcccttgctctgaggaaataagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tgagcactttgcttggtctccgtgtatttctttcctttcccttgctctgaggaaataagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space: 446706
Effective search space used: 446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
