BAC Information

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BAC

Clone NameMSMg01-132A14
Chromosome5 (Build37)
Map Location 22,668,914 - 22,669,547
singlet/doubletsinglet
Overlap geneLhfpl3
Upstream geneReln, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, EG625219, LOC100042101
Downstream geneLOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132A14.T7 (MSMg01no132_a14.b1)MSMg01-132A14.TJ (MSMg01no132_a14.g1)
ACCAG339382AG339383
length732704
length of high quality
(start - end)
621 (71 - 691)635 (70 - 704)
definitionCHROMAT_FILE: MSMg01no132_a14.b1 PHD_FILE: MSMg01no132_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:26 2005CHROMAT_FILE: MSMg01no132_a14.g1 PHD_FILE: MSMg01no132_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAAATGGGCGGAATTCT
TGAACCTGTACCCAAATGCACAGACTTCATATCTCCTCTCAGTGAACCAC
TTGGGGATACCACAGTAGATTTTATCCTCTTGAGACACTCTTCTACAGTT
AAGTTCACAGATTTCCTATCTTCTATTTTTGGCCTTGAAGGAAGTAACCT
ATGTTTTAAACCCTTCAAGCTGGAGCCCGAAGGCAGCTCCTCAACATTCA
TATCTCCTGCCTGCATCCCTGGGGTTGACAGCATAGACTTGACATGATCC
AGCTCTGACATCGACTTTAACTTTGTAGATGTAAAGTCTCCCAAATGTAG
CCCTGGTGTTAATTCCACAGATGTCAGAGCTTCTTGCTTTGAGACTGTGT
TCTTCTCCACAGGTTTTATAAGTCCTGAAAGTTGTCCTTCTATCAATTCA
GAAGATGCTCTGCCTTGGGTCTGTGGTCTTCCGATCAATTCAGAATGATC
TGCATTTCCTAAGTGTCTCCCAGGAGCCAATTTCATTGTTTCTGCCATTT
GTACCTGTGGCTCAGATACCATTTTATAAGACATTTTGTCTTCAAAGCTT
GGTACTTGATTCCTTGTGACATATTTTACACTGTGAAATGGGGACTCTTG
TCCTATCAATTCTGGTTTCATCCCCTGCCTCTCTGGCTGTGTTGTCAACT
CAAAATTTTTTACACATTCTAAATGTGGCCCT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTGAGTCCAAACTCAGTAAAGGATGAAT
TTATTTCCTCTGTCGTAGCAGTTTATAGCAGCCTGGTTGGAGGCAGTGCT
ATGTGTGACTGTAAGTGTCCCCTGTTGGCTTCTACTGTTTCTCAAGCTCA
AATGCTGCTGATTCTGGTAAAGGGTACCCGTGCCCTCCAGAGAGTATCCA
GACACATTTTCTGCACTTGTTTTTACTGCTGTAGTTCTGCCCTTAATTCA
CTACACCTAGACAGTCCTTTGTGTTTCCCATCTCCAGTAACTGACAGCAA
AATGGGATGACCTTAGATATGCCGAAAGAGTTTGAACAGCTTGTAAACCT
AGTCTTGCATCCATCTTTTGGTATATGCTCCTGTATAACTTGAGGAGCAA
TAGAAAAATTCACTATCGTAAAGTAAGTCCCATCTCCCATTCAAAAACAT
AAAATTAAGTCTCTCCTGTTTAAATAGTATCTGCTTCCACGATGGCTACA
CCACTCTTGTGATCACCAGCTATGAAGTGTATGGTTAAGTCATAGAAGTT
GGGTAGTAAAGTTGGTGAGCTATCTCTTTTGATTTTAATGTTATGGAGAA
TTCAAGGATACCCACATAATGTTGCTGTCATTCATTTATAGTCCAGTGTA
CTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_a14.g1 MSMg01no132_a14.g1 CHROMAT_FILE:
MSMg01no132_a14.g1 PHD_FILE: MSMg01no132_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:26 2005
         (635 letters)



>mm_chr5_22668714_22669748
          Length = 1035

 Score = 1226 bits (634), Expect = 0.0
 Identities = 634/634 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtgagtccaaactcagtaaaggatgaatttatttcctctgtcgtagcagtttatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgagtccaaactcagtaaaggatgaatttatttcctctgtcgtagcagtttatagc 260

                                                                       
Query: 61  agcctggttggaggcagtgctatgtgtgactgtaagtgtcccctgttggcttctactgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctggttggaggcagtgctatgtgtgactgtaagtgtcccctgttggcttctactgtt 320

                                                                       
Query: 121 tctcaagctcaaatgctgctgattctggtaaagggtacccgtgccctccagagagtatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcaagctcaaatgctgctgattctggtaaagggtacccgtgccctccagagagtatcc 380

                                                                       
Query: 181 agacacattttctgcacttgtttttactgctgtagttctgcccttaattcactacaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacacattttctgcacttgtttttactgctgtagttctgcccttaattcactacaccta 440

                                                                       
Query: 241 gacagtcctttgtgtttcccatctccagtaactgacagcaaaatgggatgaccttagata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacagtcctttgtgtttcccatctccagtaactgacagcaaaatgggatgaccttagata 500

                                                                       
Query: 301 tgccgaaagagtttgaacagcttgtaaacctagtcttgcatccatcttttggtatatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgccgaaagagtttgaacagcttgtaaacctagtcttgcatccatcttttggtatatgct 560

                                                                       
Query: 361 cctgtataacttgaggagcaatagaaaaattcactatcgtaaagtaagtcccatctccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgtataacttgaggagcaatagaaaaattcactatcgtaaagtaagtcccatctccca 620

                                                                       
Query: 421 ttcaaaaacataaaattaagtctctcctgtttaaatagtatctgcttccacgatggctac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaaaaacataaaattaagtctctcctgtttaaatagtatctgcttccacgatggctac 680

                                                                       
Query: 481 accactcttgtgatcaccagctatgaagtgtatggttaagtcatagaagttgggtagtaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accactcttgtgatcaccagctatgaagtgtatggttaagtcatagaagttgggtagtaa 740

                                                                       
Query: 541 agttggtgagctatctcttttgattttaatgttatggagaattcaaggatacccacataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttggtgagctatctcttttgattttaatgttatggagaattcaaggatacccacataa 800

                                             
Query: 601 tgttgctgtcattcatttatagtccagtgtactt 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 tgttgctgtcattcatttatagtccagtgtactt 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)