NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGATTTAGATCTATACCCCACTTTTTGATTGGGTTGCTTGAT
TTCTTTGGTGGTTAACTTCTTGAGCTCTTTATATATTTTGGATATTAGCC
CTCTGTGAGATGTGGGGTTAGTGAAGATCTTTTTCCCACTCTGTAGATTG
CTGACTATGCCCTTTGCCTTACAGAAGTTTTCCAGTTTCATGAGGTCCCA
TTTATCAATTGTTGATCTTAGAACATGAGACATTGGAGTTCTATTTAGGA
AATTTCCCCCTGTGCCAATGAGTTCAAGGCTCTTTCCTACATTCTTTCTA
TTAGATTCAGTGTACAAGGTTTTTCGTTGAGGTTCTTGGTCTACTTGGAC
TTGAGCTTGTGCGAGGTGACAAATATGGGTCTATTTTTGTTTTCCTACAC
ACAGCCAGTTAGACCAGCACCATTTATCAAAGAAGCGTTCTTTTTTCCAT
TGCATATTTTTGGCTTCTTTGTGAAAGATCAAGTGTACATAAGAGTGTGG
TTTTATTTCTGTGTCTTCAATTCTATTCCATTGAAATAGTGTCTGTCTCT
GTACCAATACCATGCATTTTTTATCAGTATTGCTCTGCAGTAAAGCTTGA
GGTCAGGGATGGTGATTCCCTCAGCTGTTCTTTTATTGTTAAGAATTGTT
T

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGACCATCTTGTGAAAAGCTACACC
AGATCCTCTACTGAGAAGACCCAGACTGCAACTCTGGCTAACTTTTAAAA
GGTTTATGCAAATTAATAATAATAATAATAATGAAGAAGAAGAGGAAGAA
GAAGGAGGAGGAGGAGGAGGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAATTTAAAAGAAAAAACAAAGGATGGGATCCT
ATATTCTTTTTATTCCTTTATCACTTCTTTCACTCCATATCTGATGTCTT
CTATCATATAACATCATAGAAAAAAGAACATAATTATACTTCCTCAAAAT
TGGACTACTTAGCATCTAGAACAAGCCAAAAAATCTGCTCATTATGTATT
ATTCATTCTCAAATATTTTGTTATAGCAACAAAAATAAACGTTAAGCACA
AATGCACTGACAAAATTAAAATAAAGCCTGTGCTAAAATTTCAGGTAAAT
TAGGCTAATGGGTTGTCAGCCAAACAAATTAAAAGCAGTAGGATATTTGA
AAATATTGAGAAGGAAACTAAACAGAACTGAGGTTCACAGAAAATACCTC
TTAAAAGC

Query= MSMg01no132_e04.g1 MSMg01no132_e04.g1 CHROMAT_FILE:
MSMg01no132_e04.g1 PHD_FILE: MSMg01no132_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:44 2005
         (634 letters)



>mm_chr5_55387105_55388138
          Length = 1034

 Score = 1176 bits (608), Expect = 0.0
 Identities = 627/634 (98%), Gaps = 3/634 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaccatcttgtgaaaagctacaccagatcctctactgagaagacccagactgcaactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 atgaccatcttgtgaaaagctacaccagatcctctactgagaagacccagactgcaactc 759

                                                                       
Query: 61  tggctaacttttaaaaggtttatgcaaattaataataataataataatgaagaagaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 758 tggctaacttttaaaaggtttatgcaaattaataataataataataatgaaaaagaagag 699

                                                                       
Query: 121 gaagaagaaggaggaggaggaggaggagaaggagaagaagaagaagaagaagaagaagaa 180
           |||||||||||||||||||||||||||| |||||  | || |||||||||||||||||||
Sbjct: 698 gaagaagaaggaggaggaggaggaggaggaggag--g-aggagaagaagaagaagaagaa 642

                                                                       
Query: 181 gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa 582

                                                                       
Query: 241 gaagaatttaaaagaaaaaacaaaggatgggatcctatattctttttattcctttatcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gaagaatttaaaagaaaaaacaaaggatgggatcctatattctttttattcctttatcac 522

                                                                       
Query: 301 ttctttcactccatatctgatgtcttctatcatataacatcatagaaaaaagaacataat 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 521 ttctttcactccatatctgatgtcttctatcatatcacatcatagaaaaaagaacataat 462

                                                                       
Query: 361 tatacttcctcaaaattggactacttagcatctagaacaagccaaaaaatctgctcatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tatacttcctcaaaattggactacttagcatctagaacaagccaaaaaatctgctcatta 402

                                                                       
Query: 421 tgtattattcattctcaaatattttgttatagcaacaaaaataaacgttaagcacaaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgtattattcattctcaaatattttgttatagcaacaaaaataaacgttaagcacaaatg 342

                                                                       
Query: 481 cactgacaaaattaaaataaagcctgtgctaaaatttcaggtaaattaggctaatgggtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cactgacaaaattaaaataaagcctgtgctaaaatttcaggtaaattaggctaatgggtt 282

                                                                       
Query: 541 gtcagccaaacaaattaaaagcagtaggatatttgaaaatattgagaaggaaactaaaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtcagccaaacaaattaaaagcagtaggatatttgaaaatattgagaaggaaactaaaca 222

                                             
Query: 601 gaactgaggttcacagaaaatacctcttaaaagc 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 221 gaactgaggttcacagaaaatacctcttaaaagc 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 168
Number of extensions: 43
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)