Query= MSMg01no132_k18.b1 MSMg01no132_k18.b1 CHROMAT_FILE:
MSMg01no132_k18.b1 PHD_FILE: MSMg01no132_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:15 2005
(338 letters)
>mm_chr5_61180512_61181247
Length = 736
Score = 578 bits (299), Expect = e-169
Identities = 327/337 (97%), Gaps = 2/337 (0%)
Strand = Plus / Minus
Query: 1 catctttgtgtctcacaggatcacctaaaactagggaataaaaggaaacctgagtttggg 60
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 535 catctttgtgtctcacaggatcatctcaaactagggaataaaaggaaacccgagtttggg 476
Query: 61 atgatccttataatagcactgaactctggtacaatattttcaatgacttagagagaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atgatccttataatagcactgaactctggtacaatattttcaatgacttagagagaaaat 416
Query: 121 gtgccgaaagaaagcttcccagctgctggcttttggagcaagtcctgagttcttttctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtgccgaaagaaagcttcccagctgctggcttttggagcaagtcctgagttcttttctac 356
Query: 181 tcactccttggggagagaaggctgactcaaaaataatgtgccttcgcccagccctcctac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcactccttggggagagaaggctgactcaaaaataatgtgccttcgcccagccctcctac 296
Query: 241 tgttagttattgtatcaaatccgaagaacttttcctctctcttctcagggaaagacaggc 300
|||||||||||| | ||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 295 tgttagttattggagcaaatccgaagaacttttcttttctctcctcagggaaagacaggc 236
Query: 301 ttgctcataaaaataaagtatgtatgggcccagtatg 337
||||||||||||||||||||||||| ||||||||||
Sbjct: 235 ttgctcataaaaataaagtatgtat--gcccagtatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 736
Length adjustment: 9
Effective length of query: 329
Effective length of database: 727
Effective search space: 239183
Effective search space used: 239183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_k18.g1 MSMg01no132_k18.g1 CHROMAT_FILE:
MSMg01no132_k18.g1 PHD_FILE: MSMg01no132_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:15 2005
(635 letters)
>mm_chr5_61065618_61066651
Length = 1034
Score = 1127 bits (583), Expect = 0.0
Identities = 622/635 (97%), Gaps = 1/635 (0%)
Strand = Plus / Plus
Query: 1 ccattccccaggacagaaatgatcaatcggttggaaaggaaagagcagtgtcctaattct 60
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 201 ccattccccaggacagaaatgatcaattgggtggaaaggaaagagcagtgtcctaattct 260
Query: 61 gttgagtggcggctccagggagtaatctttgcagaaaatgaagaatctgacttaggactc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gatgagtggcggctccagggagtaatctttgcagaaaatgaagaatctgacctaggactc 320
Query: 121 cagattgggcaagcccgatgaatgccacctcccattttcctcaacctcttcaacagcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagattgggcaagcccgatgaatgccacctcccattttcctcaacctcttcaacagcttt 380
Query: 181 cgactgtgtctgcctcaggacatcactgaactgcctgagtggagtgagggctaccctttc 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgactgtgtctgcctcagaacatcactgaactgcctgagtggagtgagggctaccctttc 440
Query: 241 tatacagccatgggcttccctgggtatgacctctcagctgacgtcgaagtgagctaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatacagccatgggcttccctgggtatgacctctcagctgacgtcgaagtgagctaattt 500
Query: 301 cagttccgttgtagcatggtgcctcagttatgatgcagggttcatgctgatcatggtaga 360
|||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 cagttcagttgtagcatg-tgcctcagttatgatgcagggttcacgctgatcatggtaga 559
Query: 361 gtatgcagagcccaccaacaactgtcaggctgccaatccgtttggggtgttggaaaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 gtatgcagagcccaccaacaactgtcaggctgccaatccgtttggggtgttagaaaaaaa 619
Query: 421 tgtttgagactggaacaaagtgaagccacagctgcaaaatgctcataccatgtggcgagc 480
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtttgagactagagcaaagtgaagccacagctgcaaaatgctcataccatgtggcgagc 679
Query: 481 attccaaggtcgcaagaaatgaaggtttgctctggtagaccagcgagtgtctgaggatgt 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 attccaaggtcgcaagaaatgaaggtttgctgtggtagaccagcgagtgtctgaggatgt 739
Query: 541 cagatacatactggccaaaggggaccccatcactagggaggaaatgcagttgaaagctct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cagatacatactggccaaaggggaccccatcactagggaggaaatgcagttgaaagctct 799
Query: 601 tgaaatcacccaggaaatgaacattccagaggaag 635
||||||| |||||||||||||||||||||||||||
Sbjct: 800 tgaaatcgcccaggaaatgaacattccagaggaag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1034
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1024
Effective search space: 640000
Effective search space used: 640000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
