Query= MSMg01no132_m16.b1 MSMg01no132_m16.b1 CHROMAT_FILE:
MSMg01no132_m16.b1 PHD_FILE: MSMg01no132_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:24 2005
(664 letters)
>mm_chr5_134701937_134703000
Length = 1064
Score = 1077 bits (557), Expect = 0.0
Identities = 629/663 (94%), Gaps = 16/663 (2%)
Strand = Plus / Plus
Query: 2 ggaattcatgcaggcattacactcaaggcatcattacacctggccctgtttgtctttcga 61
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcatgcaggcactagactcaaggcatcattacacctggccctgtttgtctttcga 261
Query: 62 gacagggtctcatgtagcccaggatagcttcaaattcagtgtatggagccaaggataact 121
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 262 gacagggtctcatgtagcccaggatagcttcaaattcagtgtatggagccaaagataact 321
Query: 122 ttgaactcctgattctcctgccttggactatgctggtgaggacaaccccaatctccaagg 181
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 322 ttgaactcctgattctcctgccttggactatgctggtgatgacagccccaatctccaagg 381
Query: 182 tgacatgaccccatagcccctccttctcagtgttctgtccccacaaccccacactccagg 241
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 tgacatgaccccatagcccctcctcctcagtgttctgtccccacaaccccacactccagg 441
Query: 242 tctttatgtcctgttcacagtacctgtgttcccccgcccctgggggcccccacccctggg 301
|||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 442 tctttatgtcctgttcacagtatctgtgttcccccg----------------cccctggg 485
Query: 302 ttcccccacccctgggcacctctagcctcttaccagctacgttattcttgccatctttgg 361
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttcccccgcccctgggcacctctagcctcttaccagctacgttattcttgccatctttgg 545
Query: 362 gcaccaggtacgtctctggcttcttggccctggagaaagaacagaccagaagggagggtt 421
|||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 546 gcaccaggtatgtctcaggcttcttcgccctggagaaagaacaggccagaagggagggtt 605
Query: 422 tcaggttacacaggcaggaggacttcccaagagaaaaaggaaccagggaaaggaaggtca 481
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 606 tcaggttacaccggcaggaggactttccaagagaaaaaggaaccagggaaaggaaggtca 665
Query: 482 ccacagagagaaggaatccactggcccagccctgggagtggaggcggagtggggacacag 541
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 666 ccacagagagaaggaatccactggcccagccctgggagtggaggcagagtggggacacag 725
Query: 542 attgtcttacaaatgaggggggtgtctatgcagccgtacttaggagggggcacacagagc 601
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 726 agtgtcttacaaatgaggggggtgtctatgcagccatacttaggagggggcacacagagc 785
Query: 602 aagctcagtgtactgcaaacccaagggagatggcaaagctagccttctatgccagcaaga 661
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 786 aagctcagtgtactgcaaacccaagggagatggcaaagccagccttctatgccagcaaga 845
Query: 662 tag 664
|||
Sbjct: 846 tag 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_m16.g1 MSMg01no132_m16.g1 CHROMAT_FILE:
MSMg01no132_m16.g1 PHD_FILE: MSMg01no132_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:24 2005
(635 letters)
>mm_chr5_134845171_134846205
Length = 1035
Score = 1123 bits (581), Expect = 0.0
Identities = 621/635 (97%), Gaps = 2/635 (0%)
Strand = Plus / Minus
Query: 1 actccattcatacagagagcaagggggaaaatattaatttctttaataatattgtattcc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 actccaatcatacagagagcaagggggaaaatattaatttctttaataatattgtattcc 575
Query: 61 caaagggaaagcatcccaggacagacatctctgtggctttatggaggctaagctatcccc 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 574 caaagggaaagcatcccaggacagacatctccgtggctttatggaggctaagctatcctc 515
Query: 121 gcgctgtctttcgcccgcttttgtctcggagttgctttcaggttcccacccttgaattac 180
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gcgctgtctttcacctgcttttgtctcggagttgctttcaggttcccacccttgaattac 455
Query: 181 accttgggcaattagatgtgttttacagagacagaaactgcaatttttagacatttccga 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 454 accttgggcaattagatgtgttttacagagacggaaactgcaatttttagacattttgga 395
Query: 241 gcaaatgaggaggtttacggtgtaaaaatattgtcacacttacctcaagacagatcacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gcaaatgaggaggtttacggtgtaaaaatattgtcacacttacctcaagacagatcacag 335
Query: 301 tagctagctagctgctaaccaaggtcaccctgcctgcttagcagaatcaggcttatcctg 360
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 334 tagctagctagctgctaagcaaggtcaccctgcctgcccagcagaatcaggcttatcctg 275
Query: 361 gtgagaggctcatggctaagtcaacagctgtcaaccagtggtcctgcagctaaattttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtgagaggctcatggctaagtcaacagctgtcaaccagtggtcctgcagctaaattttac 215
Query: 421 ttgtgtgtatatatacttttttcttttaaatttatttatgtatttattttaaataagaga 480
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttgtgtatatatat--ttttttcttttaaatttatttatgtatttattttaaataagaga 157
Query: 481 gtgttctgtcagtagatatgcctacatgccaggtgaaatcacatcccattactgatggtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gtgttctgtcagtagatatgcctacatgccaggtgaaatcacatcccattactgatggtt 97
Query: 541 gtgagccaccatgtggttgctgggaattgaattcaggacctctggaagagcagctggtat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gtgagccaccatgtggttgctgggaattgaattcaggacctctggaagagcagctggtat 37
Query: 601 tcttaaccacggagccatctctccagccctccctc 635
|||||||||||||||||||||||||||||||||||
Sbjct: 36 tcttaaccacggagccatctctccagccctccctc 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
