BAC Information

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BAC

Clone NameMSMg01-132N18
Chromosome5 (Build37)
Map Location 122,196,733 - 122,197,004
singlet/doubletsinglet
Overlap geneAtxn2
Upstream geneOas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap
Downstream geneSh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132N18.T7 (MSMg01no132_n18.b1)MSMg01-132N18.TJ (MSMg01no132_n18.g1)
ACCAG339989AG339990
length715697
length of high quality
(start - end)
316 (40 - 355)498 (68 - 565)
definitionCHROMAT_FILE: MSMg01no132_n18.b1 PHD_FILE: MSMg01no132_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:30 2005CHROMAT_FILE: MSMg01no132_n18.g1 PHD_FILE: MSMg01no132_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGTCATCCTGATCAACACAGGAAGTTTTCAGGCCAGCCAGGATACATAT
TTAGTCCTTGTCTCAAAACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACTCCCTCAGATGGGGCGCGT
AAAATGGTTCAGTGGGTCAAGGCACATGAGCCTGATGTCCTGAGTTCAGC
CCCCACATGGAGGTCCTCTTATTACACCTGCATCATGGTGCACCCACTAC
CCCCACACTAAATAAAATTTTTTATAAGCCACAACAGAACCAAACATCAG
CCAGTTTGGATAGCTCTTGGACGANAGCCCGTTTTTCTAACACATTAAAG
AGTCTGAGTACCTCCGCAAAACTGGATTTTAAAAATAGAGGGGCGGGGGG
AAGTCCTAAAGAGGGGCAGTACATCTTAATAAAGAAGAGAAGTGCTGATC
AGGGTACACCTTGCCCGACGACCAGCTTCTCTCAACATGTCTGAATCAAG
GCCACATAACCCTTCCAGGCTGGACTACTCATTGTGTGACCACCTGACTC
TCATTAAGATAGCCCGATCAATATTCACCATGCTTTAAAACTCTTTAGAC
AACCATTTCTCTCTGAGTTTTTGAAGATAGCCTTGGTCTACCTTTTACGC
TATTATATACCTTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAAATCTGGAGGCCCTCTTATTCTACTATGAG
AAAGTAGGCTTTTATTGGGGCTTTCAGGGCCACACCTATAACCTCAGCAC
CAGGGAGACAGAGTCAGGGGATCTCAGTGTCTCCGGGGCAGCCTGGGCTA
CATGAGACCCTATCTCAGACACATAAACAAACTCTGAATAGACACAGAAA
CTGACTAGCAAACAAAACCAAGATCTAAAAAAAGGAGCCTTTCGGGGCTG
GAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTG
AGTTCAAATTCCAACAACCACATGGTGGCTCGCAACCATCTGTAATGAGA
TCTGATGCCCTCTTCAGGTAAATCTGAAGACAGCTACAGTGTACTTAGAT
AAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGGTGAGAGCTTAAAGAGAAGAGG
GGCCAAGCAGCTCCTNTNTAAATTAAAAAAATAAAAAAAAGGAACCTTTC
GTGTCTTTTTTCTCTTTTATTCTTGAGGAAAAAAATCTTGCTCTGTAGCC
CAAGCTGTCTCAGGTGCTTGGGTCCAGGCAATCCTCCTGCCTTAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_n18.b1 MSMg01no132_n18.b1 CHROMAT_FILE:
MSMg01no132_n18.b1 PHD_FILE: MSMg01no132_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:30 2005
         (316 letters)



>mm_chr5_122196318_122197036
          Length = 719

 Score =  395 bits (204), Expect = e-114
 Identities = 265/314 (84%), Gaps = 45/314 (14%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggtcatcctgatcaacacaggaagttttcaggccagccaggatacatattta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattccaggtcatcctgatcaacacaggaagttttcaggccagccaggatacatattta 628

                                                                       
Query: 65  gtccttgtctcaaaacacacacacacacacacacacacacacacacacacacacacacac 124
           ||||||||||||||                                          ||||
Sbjct: 627 gtccttgtctcaaa------------------------------------------acac 610

                                                                       
Query: 125 acacacacacacacacactccctcagatggggcgcgtaaaatggttcagtgggtcaaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acacacacacacacacactccctcagatggggcgcgtaaaatggttcagtgggtcaaggc 550

                                                                       
Query: 185 acatgagcctgatgtcctgagttcagcccccacatggaggtcctct---tattacacctg 241
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 549 acatgagcctgatgtcctgagttcagcccccacatggaggtcctctgactattacacctg 490

                                                                       
Query: 242 catcatggtgcacccactacccccacactaaataaaattttttataagccacaacagaac 301
           ||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||
Sbjct: 489 catcatggtgcacccactacccccacactaaataaaactaaatataagccacaacagaac 430

                         
Query: 302 caaacatcagccag 315
           ||||||||||||||
Sbjct: 429 caaacatcagccag 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 719
Length adjustment: 9
Effective length of query: 307
Effective length of database: 710
Effective search space:   217970
Effective search space used:   217970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)