BAC Information

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BAC

Clone NameMSMg01-132P20
Chromosome5 (Build37)
Map Location 150,300,367 - 150,300,560
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik
Downstream geneLOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132P20.T7 (MSMg01no132_p20.b1)MSMg01-132P20.TJ (MSMg01no132_p20.g1)
ACCAG340083AG340084
length705685
length of high quality
(start - end)
194 (122 - 315)588 (69 - 656)
definitionCHROMAT_FILE: MSMg01no132_p20.b1 PHD_FILE: MSMg01no132_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:40 2005CHROMAT_FILE: MSMg01no132_p20.g1 PHD_FILE: MSMg01no132_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGCAGGGCGGAATTCT
GTTTTGTTACTTAATAGAGTCCGTTAAATAAAAGCAACCTTTTAAAATTA
CATCAAGAAACTTTACCCAAACAATTACTCTTTGTGGCCATCTTATAGAG
ATTTTAAAAGTTGGTACTTTGTACTGAAAACAATCAAATATCAAGTAGAG
AATCAAATTGCCCAGATAGGTATTTCAAAGTTTACCTGGCCAGTTCCTAC
CTGAAAGAGTGCGTTTAAGCGTCGTAGCTCTTCCAGAGTCACTTGCTGCT
CAATCTCACCGAGACTTTTTTAAATAAATTAGAATCAACAACGTGAAGAC
TTTTCCCAAGGAAAAGATGCAGAGCTGTTCCCCCCAGCACAAGTCCTGGG
AACCCTGAAGTGCCTGGTGTGGACAGAGGAAGTTCAAACGTACAGGGGCC
CTGGGCTGGGGTCAGCAGATCCTGAACACTGTCTTTAGAACCATGGGAAA
GGAATTCTCACGCTGCTTTCTTCCCTGTCAGTCTAGCTTCTTTTCTATCC
TCCAGGTCTGTACCTACCCTCATCCTCTCTCCTGCTCTCTTTCCCTACGT
TGTCGCTTCCTTCTGGCTTACACCACCCAACCTGGTGACAGAATTTGGGG
CTGGGGGTTGAACAGAACCAGCAGAGACTCCAAACAGTGAAATGGCAACA
CCTTG
GATGAAGTGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTAAATCCCAAACAGCTGAGTACATCTGCATG
GGATTTTTTTTTTCCTAACTAAGTCATTTGAAGTGGGAGGACCCACTCTT
CATCTGACTCTTCTGAGGTGGGAGGAGCCTTCTACAGTTGATTTAGCTGC
AGCTCTGTAAGTAAAGACCTTTTCCATGTCCCCCATGGTGGTGACAGATG
AAAGTGACCGTCCATGTTTATCTATATTGTTTGTTGGCTGTTCATCGTGG
AAAATGGGTACATACTACTTCTCAGGGTCTAACCGGAGATTAAATACGTA
TTGCAGGGAGGAATGTCTGGAAAGGGAAGCTTATTGGCTATGGCCTAAGG
GCCTCTAGGTACCTCATTAGCATGGAGAACTCTGTTCTGGGCCTACGTGA
ACACAGGTCACATTTCCTTATGTGGGGAGTGTGGCACGTGTTCCATGCCA
GGAATCTATCAGGGAGCAGGGGGTAGCTTAAGTTTCAGGTGTGTGCCCAC
CGCATCTCTGGGTCTCAACCTGATCTACCCACCAAGCTTCCTGGCCTGGT
TTTACTGACCCAAAGTAGACAGTCATTGGAAAAGAAGACTCCAGGTAAAA
GCACTTCCAAGCACCTAGAACAAAATAGCTCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_p20.b1 MSMg01no132_p20.b1 CHROMAT_FILE:
MSMg01no132_p20.b1 PHD_FILE: MSMg01no132_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:40 2005
         (194 letters)



>mm_chr5_150300167_150300760
          Length = 594

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattactctttgtggccatcttatagagattttaaaagttggtactttgtactgaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caattactctttgtggccatcttatagagattttaaaagttggtactttgtactgaaaac 335

                                                                       
Query: 61  aatcaaatatcaagtagagaatcaaattgcccagataggtatttcaaagtttacctggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aatcaaatatcaagtagagaatcaaattgcccagataggtatttcaaagtttacctggcc 275

                                                                       
Query: 121 agttcctacctgaaagagtgcgtttaagcgtcgtagctcttccagagtcacttgctgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agttcctacctgaaagagtgcgtttaagcgtcgtagctcttccagagtcacttgctgctc 215

                         
Query: 181 aatctcaccgagac 194
           ||||||||||||||
Sbjct: 214 aatctcaccgagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)